Locus 5626

Sequence ID 3R_DroMel_CAF1
Location 14,821,920 – 14,822,040
Length 120
Max. P 0.790710
window9167

overview

Window 7

Location 14,821,920 – 14,822,040
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -39.10
Consensus MFE -38.43
Energy contribution -38.43
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.76
Structure conservation index 0.98
SVM decision value 0.59
SVM RNA-class probability 0.790710
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14821920 120 + 27905053
AUUAUUAUGGGACGAUGUUCAAAGCCCAUUGGCAAUUUGAAGAUCGGCGGACCAAGAUUCGUUGGGACUGAUUUACGAGCACCAAAAUGGUGGGGAGCCAAAGGGUGAGCCGUCUUCAAG
.......(((((((..((((...((((.(((((..((((.(((((((....((((......))))..))))))).))))((((.....))))....))))).)))))))))))).))).. ( -39.40)
>DroSec_CAF1 51 120 + 1
AUUAUUAUGGGACGAUGUUCAAAGCCCAUUGGCAAUUUGGAGAUCGGCGGACCAAGAUUCGUUGGCACUGAUUUACGAGCACCGAAAUGGUGGGGAGCCAAAGGGUGAGCCGUCUUCAAG
.......(((((((..((((...((((.(((((..((((.(((((((..(.((((......))))).))))))).))))((((.....))))....))))).)))))))))))).))).. ( -38.60)
>DroSim_CAF1 207 120 + 1
AUUAUUAUGGGACGAUGUUCAAAGCCCAUUGGCAAUUUGGAGAUCGGCGGACCAAGAUUCGUUGGCACUGAUUUACGAGCACCAAAAUGGUGGGGAGCCAAAGGGUGAGCCGUCUUCAAG
.......(((((((..((((...((((.(((((..((((.(((((((..(.((((......))))).))))))).))))((((.....))))....))))).)))))))))))).))).. ( -39.30)
>consensus
AUUAUUAUGGGACGAUGUUCAAAGCCCAUUGGCAAUUUGGAGAUCGGCGGACCAAGAUUCGUUGGCACUGAUUUACGAGCACCAAAAUGGUGGGGAGCCAAAGGGUGAGCCGUCUUCAAG
.......(((((((..((((...((((.(((((..((((.(((((((....((((......))))..))))))).))))((((.....))))....))))).)))))))))))).))).. (-38.43 = -38.43 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:43 2006