Locus 5624

Sequence ID 3R_DroMel_CAF1
Location 14,818,465 – 14,818,584
Length 119
Max. P 0.999110
window9165

overview

Window 5

Location 14,818,465 – 14,818,584
Length 119
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 91.28
Mean single sequence MFE -26.46
Consensus MFE -25.56
Energy contribution -25.16
Covariance contribution -0.40
Combinations/Pair 1.09
Mean z-score -2.01
Structure conservation index 0.97
SVM decision value 3.38
SVM RNA-class probability 0.999110
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14818465 119 - 27905053
CAUCGGAAAUGAUGUCAGUCAAGCUGACAGUGCCCAGCCUCCACGGCUGUACGAGUAUGUGUAUCUGCCUCCCCCUUUUUUUUUUUUUUUGUUUCCAUCAUUUCCAUCUUCACGCAUUC
....((((((((((((((.....))))).((((..((((.....))))))))............................................))))))))).............. ( -28.10)
>DroSec_CAF1 10991 109 - 1
CAUCGGAAAUGAUGUCAGUCAAGCUGACAGUGCCCAGCCUCCACGGCUAUACGAGUAUGUGUAUCUGCCCCCC----------UUUUUUUGUUUCCAUCAUUUCCAUCUUCACGCAUUC
....((((((((((..((.(((((((........))))......(((.(((((......)))))..)))....----------.....)))))..)))))))))).............. ( -26.70)
>DroSim_CAF1 11484 109 - 1
CAUCGGAAAUGAUGUCAGUCAAGCUGACAGUGCCCAGCCUCCACGGCUAUACGAGUAUGUGUAUCUGCCCCCC----------UUUUUUUGUUUCCAUCAUUUCCAUCUUCACGCAUUC
....((((((((((..((.(((((((........))))......(((.(((((......)))))..)))....----------.....)))))..)))))))))).............. ( -26.70)
>DroEre_CAF1 12767 103 - 1
CAUCGGAAAUGAUGUCAGUCAAGCUGACAGUGCCCAGCUUCCACGGCUGUACGAGUAUGUGUAUCUGCCCC-C----------UUUUUUUGU-----UCAUUUCCAUCUUCACGCAUUC
....((((((((((((((.....))))))(((.........)))(((.(((((......)))))..)))..-.----------.........-----)))))))).............. ( -25.90)
>DroYak_CAF1 11764 103 - 1
CAUCGGAAAUGAUGUCAGUCAAGCUGACAGUGCCCAGCCUCAACGGCUGUACGAGUAUGUGUAUCUGCCCC-C----------UUUUUUUGU-----UCAUUUUCAUCUUCACGCAUUC
....((((((((((((((.....))))))((((..((((.....))))))))...................-.----------.........-----)))))))).............. ( -24.90)
>consensus
CAUCGGAAAUGAUGUCAGUCAAGCUGACAGUGCCCAGCCUCCACGGCUGUACGAGUAUGUGUAUCUGCCCCCC__________UUUUUUUGUUUCCAUCAUUUCCAUCUUCACGCAUUC
....((((((((((((((.....))))))...............(((.(((((......)))))..)))............................)))))))).............. (-25.56 = -25.16 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:41 2006