Locus 5623

Sequence ID 3R_DroMel_CAF1
Location 14,818,244 – 14,818,345
Length 101
Max. P 0.988016
window9164

overview

Window 4

Location 14,818,244 – 14,818,345
Length 101
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 89.90
Mean single sequence MFE -31.36
Consensus MFE -28.54
Energy contribution -29.18
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.86
Structure conservation index 0.91
SVM decision value 2.10
SVM RNA-class probability 0.988016
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14818244 101 - 27905053
GGCAAUCAGAGCAACGUGUUUUGUAUCUAAUGAAUUGCGACUCUGGGGAACUCACU--GCUCCAUGUAUCCAUUGUCGCAGUAGCAAUG--------UUGCAAGCUCUAAG
.......(((((.....................((((((((..((((((.(.....--).)))......)))..)))))))).(((...--------.)))..)))))... ( -26.00)
>DroSec_CAF1 10774 111 - 1
GGCAAUCAGAGCAACGUGUUUCGUAUCUAAUGAAUUGCGACUCUUGGGAACUCACUCUCCUCCAUGCUUCCAUUGUCGCAGUAGCAAUGUUGCAAUGUUGCAAGCUCUAAG
.((((.((..((((((((((((((.....))))((((((((...(((((.(..............).)))))..))))))))))).)))))))..)))))).......... ( -32.04)
>DroSim_CAF1 11255 111 - 1
GGCAAUCAGAGCAACGUGUUUCGUAUCUAAUGAAUUGCGACUCUGGGGAACUCACUCUCCUCCCUGUUUCCAUUGUCGCAGUAGCAAUGUUGCAAUGUUGCAAGCUCUAAA
.((((.((..((((((((((((((.....))))((((((((....((((((..............))))))...))))))))))).)))))))..)))))).......... ( -34.84)
>DroEre_CAF1 12545 104 - 1
GGCAAUCAGAGCAACGUGUUUCGUAUCUAAUGAAUUGCGACUCUGGGGAACUCAC-----UCCAUGUUUCCAUUGUCGCAGUAGCAAUGGUCCAAUGUUGCAAGCUCUA--
.......(((((.(((.....))).........((((((((....((((((....-----.....))))))...)))))))).((((((......))))))..))))).-- ( -32.20)
>DroYak_CAF1 11543 104 - 1
GGCAAUCAGAGCAACGUGUUUCGUAUCUAAUGAAUUGCGACUCUGGGGAACUCAC-----UCCAUGUUUCCAUUGUCGCAGAAGCAAUGGUACAAUGUUGCAAGCUCUA--
.......(((((.......(((((.....)))))(((((((..(((((......)-----))))(((..(((((((.......))))))).)))..)))))))))))).-- ( -31.70)
>consensus
GGCAAUCAGAGCAACGUGUUUCGUAUCUAAUGAAUUGCGACUCUGGGGAACUCACU___CUCCAUGUUUCCAUUGUCGCAGUAGCAAUGGUGCAAUGUUGCAAGCUCUAA_
.......(((((.(((.....))).........((((((((....((((((..............))))))...)))))))).(((((........)))))..)))))... (-28.54 = -29.18 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:40 2006