Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,094,895 – 2,095,003 |
Length | 108 |
Max. P | 0.968525 |
Location | 2,094,895 – 2,095,003 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 91.80 |
Mean single sequence MFE | -35.40 |
Consensus MFE | -27.26 |
Energy contribution | -28.14 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.07 |
Mean z-score | -1.90 |
Structure conservation index | 0.77 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.808550 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2094895 108 + 27905053 UGGUGUUUUUCUCCCAGUACAACAA-AGCUGUUGGCUAUUCAGAGCGUAGUAUGCAUGAUGAGUGCAUGCGGCAGUUGAAAACUACCAGCAAGCUGCAGCACUAAAGCA (((.(.......))))...(((((.-...)))))(((..(((..((((...)))).)))..(((((.((((((.((((........))))..)))))))))))..))). ( -30.70) >DroSec_CAF1 237772 108 + 1 UGUGGUUUUUCUCCCAGUGCAACAA-AGCUGUUGGCUAUUCAGAGCGUAGUAUGCAUGAUGAGUGCAUGCGGCAGCUGGAAACUGCCUGCAAGCUGCAGCACUAAAGCA ....(((((......(((((.....-((((((.(((..(((..(((((.((((((((.....)))))))).)).))).)))...))).)).))))...)))))))))). ( -35.80) >DroSim_CAF1 240879 108 + 1 UGUGGUUUUUCUCCCAGUGCAACAA-AGCUGUUGGCUAUUCAGAGCGUAGUAUGCAUGAUGAGUGCAUGCGGCAGCUGGAAACUGCCUGCAAGCUGCAGCACUAAAGCA ....(((((......(((((.....-((((((.(((..(((..(((((.((((((((.....)))))))).)).))).)))...))).)).))))...)))))))))). ( -35.80) >DroEre_CAF1 239197 107 + 1 GGCUGU-UUUCUCCCAGUGCAACAAUAGCUGUUGGCUAUUCAGAGCGUAGUAUGCAUGAUGAGUGCAUGCGGCAGCUGGAAACUGCCUGCA-GAUAAAGCUAUAAAGCA ((((..-..(((..(((.(((....((((((((.(((......)))...((((((((.....)))))))))))))))).....)))))).)-))...))))........ ( -35.40) >DroYak_CAF1 241890 108 + 1 UGUGGU-UUUCUCGCAGUGCAAUAAUAGCUGUUGGCUAUUCAGAGCGUAGUAUGCAUGAUGAGUGCAUGCGGCAGCUGGCAACUGCCUGCAAGCUAAAGCACUAAAGCA .(((.(-((.((.((((.(((....((((((((.(((......)))...((((((((.....)))))))))))))))).....))))))).))..))).)))....... ( -39.30) >consensus UGUGGUUUUUCUCCCAGUGCAACAA_AGCUGUUGGCUAUUCAGAGCGUAGUAUGCAUGAUGAGUGCAUGCGGCAGCUGGAAACUGCCUGCAAGCUGCAGCACUAAAGCA ...............(((((......((((((.(((..(((((...((.((((((((.....)))))))).))..)))))....))).))).)))...)))))...... (-27.26 = -28.14 + 0.88)
Location | 2,094,895 – 2,095,003 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 91.80 |
Mean single sequence MFE | -30.34 |
Consensus MFE | -28.08 |
Energy contribution | -27.80 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.18 |
Mean z-score | -1.56 |
Structure conservation index | 0.93 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968525 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2094895 108 - 27905053 UGCUUUAGUGCUGCAGCUUGCUGGUAGUUUUCAACUGCCGCAUGCACUCAUCAUGCAUACUACGCUCUGAAUAGCCAACAGCU-UUGUUGUACUGGGAGAAAAACACCA ...((((((((.((((...(((((((((.....))))))(((((.......))))).......(((......)))....))).-)))).))))))))............ ( -26.60) >DroSec_CAF1 237772 108 - 1 UGCUUUAGUGCUGCAGCUUGCAGGCAGUUUCCAGCUGCCGCAUGCACUCAUCAUGCAUACUACGCUCUGAAUAGCCAACAGCU-UUGUUGCACUGGGAGAAAAACCACA (((..(((.((((..(((..((((((((.....))))))(((((.......)))))...........))...)))...)))).-)))..))).(((........))).. ( -31.30) >DroSim_CAF1 240879 108 - 1 UGCUUUAGUGCUGCAGCUUGCAGGCAGUUUCCAGCUGCCGCAUGCACUCAUCAUGCAUACUACGCUCUGAAUAGCCAACAGCU-UUGUUGCACUGGGAGAAAAACCACA (((..(((.((((..(((..((((((((.....))))))(((((.......)))))...........))...)))...)))).-)))..))).(((........))).. ( -31.30) >DroEre_CAF1 239197 107 - 1 UGCUUUAUAGCUUUAUC-UGCAGGCAGUUUCCAGCUGCCGCAUGCACUCAUCAUGCAUACUACGCUCUGAAUAGCCAACAGCUAUUGUUGCACUGGGAGAAA-ACAGCC .(((......((((...-((((((((((.....))))))(((((.......))))).............((((((.....))))))..))))...))))...-..))). ( -28.70) >DroYak_CAF1 241890 108 - 1 UGCUUUAGUGCUUUAGCUUGCAGGCAGUUGCCAGCUGCCGCAUGCACUCAUCAUGCAUACUACGCUCUGAAUAGCCAACAGCUAUUAUUGCACUGCGAGAAA-ACCACA .......(((.(((..((((((((((((.....))))))(((((.......))))).......((....((((((.....))))))...))..)))))).))-).))). ( -33.80) >consensus UGCUUUAGUGCUGCAGCUUGCAGGCAGUUUCCAGCUGCCGCAUGCACUCAUCAUGCAUACUACGCUCUGAAUAGCCAACAGCU_UUGUUGCACUGGGAGAAAAACCACA ..(((((((((..(((...((.((((((.....))))))(((((.......))))).......(((......))).....))..)))..)))))).))).......... (-28.08 = -27.80 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:08 2006