Locus 5619

Sequence ID 3R_DroMel_CAF1
Location 14,814,056 – 14,814,157
Length 101
Max. P 0.550724
window9153

overview

Window 3

Location 14,814,056 – 14,814,157
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 94.55
Mean single sequence MFE -23.28
Consensus MFE -18.76
Energy contribution -19.60
Covariance contribution 0.84
Combinations/Pair 1.06
Mean z-score -1.47
Structure conservation index 0.81
SVM decision value 0.03
SVM RNA-class probability 0.550724
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14814056 101 + 27905053
CCAUUUUGGGGCCAAUUCAAUCCACUCAACUGCGGUUGGUUUUGCCAUCGCUGCGUCUGAAAUUCUGACUGGGCUCCUCUUGUUUAUUUUCCCAACAUUUU
.......((((((...(((......(((..(((((((((.....)))..))))))..))).....)))...))))))........................ ( -24.40)
>DroSec_CAF1 6642 101 + 1
CUAUUUUGGGGCCAAUCCAAUCCACUCAGCUGCGGUUGGUUUUGCCAUCGCUGCGUCUGAAAUUCUGACUGGGCUCCUCUUGUUUAUUUUCCCAACAUUUU
.......((((((...............((.(((((.((.....))))))).))(((.(.....).)))..))))))........................ ( -25.90)
>DroSim_CAF1 6651 100 + 1
C-AUUUUGGGGCCAAUCCAAUCCACUCAGCUGCGGUUGGUUUUGCCAUCGCUGCGUCUGAAAUUCUGACUGGGCUCCUCUUGUUUAUUUUCCCAACAUUUU
.-.....((((((...............((.(((((.((.....))))))).))(((.(.....).)))..))))))........................ ( -25.90)
>DroEre_CAF1 8330 101 + 1
CCAUUUUGGGGCCAAUACAAUCCACUCAACUUCGGUUGGUUUCGCCUUCGCUGCGUCUGAAAUUCUGACUGGGCUCCUCUUGUUUAUUUUCCCAACAUUUU
.......((((((............(((((....)))))...............(((.(.....).)))..))))))........................ ( -20.20)
>DroYak_CAF1 6722 101 + 1
CCAUUUUGGAGCCAAUACAAGCCACUCAACUGCGGUUGGUUUUGCCUUCGAUGCGUCUGAAAUUCUGACUGCGCUCCUCUUGUUUAUUUUCCCGACAUUUU
.......((((((((.((.((((.(......).)))).)).)))........(((((.(.....).))).)))))))........................ ( -20.00)
>consensus
CCAUUUUGGGGCCAAUACAAUCCACUCAACUGCGGUUGGUUUUGCCAUCGCUGCGUCUGAAAUUCUGACUGGGCUCCUCUUGUUUAUUUUCCCAACAUUUU
.......((((((..................((((((((.....)))..)))))(((.(.....).)))..))))))........................ (-18.76 = -19.60 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:30 2006