Locus 5617

Sequence ID 3R_DroMel_CAF1
Location 14,811,533 – 14,811,630
Length 97
Max. P 0.748352
window9148

overview

Window 8

Location 14,811,533 – 14,811,630
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 82.98
Mean single sequence MFE -38.00
Consensus MFE -27.68
Energy contribution -27.47
Covariance contribution -0.22
Combinations/Pair 1.12
Mean z-score -1.97
Structure conservation index 0.73
SVM decision value 0.47
SVM RNA-class probability 0.748352
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14811533 97 + 27905053
GGGGCUCCACUCCGAUCGCCCGAUUGCCCCUUUGCCCAUCCUGCCAUUAUUCCAUCAUGCAGAGUGUGAGUGGGUGGGUGGGACUGGGUGGGGCUGG
.((((............))))....(((((...((((((((..((.....((((((((((...)))))).))))..))..))).))))))))))... ( -43.10)
>DroSec_CAF1 4156 88 + 1
U--GCUCCACCCUGAUGGCCCGAUUGCCCCUUUGCCCGUCCUGCCAUUAUUCCAUUAUGCCGACU-----UGGAUGAGUGGG--UGGGUGGGGCUGG
.--((((((((((((((((..(((.((......))..)))..))))))).........(((.(((-----(....)))).))--))))))))))... ( -37.40)
>DroSim_CAF1 4169 83 + 1
U--GCUCCACCCUGAUGGCCCGAUUGCCCCUUUGCCCGUCC-----UUAUUCCAUUAUGCCGACU-----UGGAUGAGUGGG--UGGGUGGGGCUGG
.--(((((((((....(((......))).....(((((..(-----((((.(((...........-----))))))))))))--))))))))))... ( -33.50)
>consensus
U__GCUCCACCCUGAUGGCCCGAUUGCCCCUUUGCCCGUCCUGCCAUUAUUCCAUUAUGCCGACU_____UGGAUGAGUGGG__UGGGUGGGGCUGG
...(((((((((.(((((..(((........))).)))))..........((((((...(((........)))...))))))...)))))))))... (-27.68 = -27.47 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:25 2006