| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,810,597 – 14,810,717 |
| Length | 120 |
| Max. P | 0.791337 |
| Location | 14,810,597 – 14,810,717 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 94.61 |
| Mean single sequence MFE | -43.20 |
| Consensus MFE | -38.92 |
| Energy contribution | -39.67 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.791337 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14810597 120 + 27905053 AGUCGCCCACUGCCGGCUCCUCCAAGGUGGUCUCCGGCCACGAGUUCGACUCGAUCAGCAACAUAACGCUGAGCAACGCCCUGCGGCAGCUGGCCAGCUUGGUCCUCAUAGCCAGCGAUA ..........(((.((((...(((((.(((((....(((.((((.....)))).(((((........)))))(((......))))))....))))).))))).......)))).)))... ( -44.90) >DroPse_CAF1 4261 120 + 1 AUUCACCCACCGCCGGCUCCUCGAAAGUCGUCUCCGGCCACGAGUUCGACUCCAUCAGCAACAUCACCCUGAGCAAUGCCCUGCGGCAGCUGGCCAGCCUGGUGCUCAUCGCCAGCGACA ...........(((((((((.....(((((.(((.(....))))..)))))...((((..........))))(((......))))).)))))))..((.(((((.....))))))).... ( -34.60) >DroSec_CAF1 3277 120 + 1 AGUCGCCCACCGCCGGCUCCUCCAAGGUGGUCUCCGGCCACGAGUUCGACUCGAUCAGCAACAUAACGCUGAGCAACGCCCUGCGGCAGCUGGCCAGCUUGGUCCUCAUAGCCAGCGACA .(((((........((((...(((((.(((((....(((.((((.....)))).(((((........)))))(((......))))))....))))).))))).......)))).))))). ( -47.00) >DroSim_CAF1 3292 120 + 1 AGUCGCCCACCGCCGGCUCCUCCAAGGUGGUCUCCGGCCACGAGUUCGACUCGAUCAGCAACAUAACGCUGAGCAACGCCCUGCGGCAGCUGGCCAGCUUGGUCCUCAUAGCCAGCGACA .(((((........((((...(((((.(((((....(((.((((.....)))).(((((........)))))(((......))))))....))))).))))).......)))).))))). ( -47.00) >DroEre_CAF1 4991 120 + 1 AGUCGCCCACCGCCGGCUCCUCCAAGGUGGUAUCCGGCCACGAGUUCGACUCGAUCAGCAACAUAACGCUGAGCAACGCCCUGCGGCAGCUGGCCAGCUUGGUCCUCAUAGCCAGCGACA .((((((....(((((..((.(....).))...)))))..((((.....)))).(((((........)))))(((......)))))).((((((.....((.....))..))))))))). ( -45.10) >DroYak_CAF1 3423 120 + 1 AGUCGCCCACUGCCGGCUCCUCCAAGGUGGUUUCCGGCCACGAGUUCGACUCGAUCAGCAACAUAACGCUGAGCAACGCCCUGCGGCAAUUGGCCAGCUUAGUCCUCAUAGCCAGCGACA .((((((((((...((.....))..))))).....(((((((((.....)))).(((((........))))).....(((....)))...))))).(((..........)))..))))). ( -40.60) >consensus AGUCGCCCACCGCCGGCUCCUCCAAGGUGGUCUCCGGCCACGAGUUCGACUCGAUCAGCAACAUAACGCUGAGCAACGCCCUGCGGCAGCUGGCCAGCUUGGUCCUCAUAGCCAGCGACA .((((((....(((((..((.(....).))...)))))..((((.....)))).(((((........)))))(((......)))))).((((((................))))))))). (-38.92 = -39.67 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:25 2006