Locus 5615

Sequence ID 3R_DroMel_CAF1
Location 14,808,783 – 14,808,880
Length 97
Max. P 0.905733
window9146

overview

Window 6

Location 14,808,783 – 14,808,880
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 90.20
Mean single sequence MFE -38.36
Consensus MFE -31.90
Energy contribution -32.58
Covariance contribution 0.68
Combinations/Pair 1.04
Mean z-score -1.74
Structure conservation index 0.83
SVM decision value 1.04
SVM RNA-class probability 0.905733
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14808783 97 + 27905053
UCCAUCUGUGCUGUGAACGUUGAUGCCGUUCCUGAGGGCGUUCACUUGGGUCCGUUCAUGAUUCCUGGACGGACGCCGGGUAUAGUGCCCAGUGGAG
(((((..(..(((((..(((.((((((.((...)).)))))).))..(((((((((((.......))))))))).)))..)))))..)...))))). ( -40.60)
>DroSec_CAF1 1468 97 + 1
UCCUUCUGUGUUGCGAACGAGGAUGCCGUUCCUGAGGGCGGUUACUUGGGUCCGUUCAUGAUUCCUGGACGGACGCCGGGUAUAGUGCCCAGUGGAG
(((..((.......(((((.......)))))....(((((.(((((((((((((((((.......))))))))).))))))).).))))))).))). ( -40.30)
>DroSim_CAF1 1474 94 + 1
UCC---UGUGCUGCGAACGAGGAUGCCGUUCCUGAGGGCGGUCACUUGGGUCCGUUCAUGAUUCCUGGACGGACGCCGGGUAUAGUGCCCAGUGGAG
...---....(..((((((.......)))))....(((((.(.(((((((((((((((.......))))))))).))))))..).))))).)..).. ( -38.40)
>DroEre_CAF1 3118 97 + 1
UCCUUCUGUGCUCCGAAUUAGGAUGCUGUUCCUGAGGGCGUUCACUUGGGUCCGUUCAUGAUUCCUGGACGGACGCCGGGUAUAGUGCCCAGUGGAG
..........(((((..((((((......))))))(((((...(((((((((((((((.......))))))))).))))))....)))))..))))) ( -41.70)
>DroYak_CAF1 1561 94 + 1
UCCUU---UGCUCCAAAUUAGGAUGAUGUUCUUGAGGGCGUUCACUUGGGACCGUUCAUGAUUCCUGGACGGACGCCGGGUAUAGUGCCAAGUGGAG
.....---..(((((..((((((......)))))).((((...(((((((.(((((((.......))))))).).))))))....))))...))))) ( -30.80)
>consensus
UCCUUCUGUGCUGCGAACGAGGAUGCCGUUCCUGAGGGCGUUCACUUGGGUCCGUUCAUGAUUCCUGGACGGACGCCGGGUAUAGUGCCCAGUGGAG
(((................((((......))))..(((((...(((((((((((((((.......))))))))).))))))....)))))...))). (-31.90 = -32.58 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:23 2006