Locus 5614

Sequence ID 3R_DroMel_CAF1
Location 14,808,644 – 14,808,743
Length 99
Max. P 0.625818
window9145

overview

Window 5

Location 14,808,644 – 14,808,743
Length 99
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 75.94
Mean single sequence MFE -17.57
Consensus MFE -12.14
Energy contribution -12.95
Covariance contribution 0.81
Combinations/Pair 1.05
Mean z-score -1.53
Structure conservation index 0.69
SVM decision value 0.19
SVM RNA-class probability 0.625818
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14808644 99 - 27905053
AGUAAGCCCGAUAGCGAAAACAAUUAAUUAUAUACAUUUAUAUAAAGCAAGUUGACUCAACAAAUGGUUG--UCUUUGUGGGUGGAAGUCAAUAGAGAAAU----------------
.....((((....(((((.(((((((.(((((((....))))))).....((((...))))...))))))--).)))))))))..................---------------- ( -17.60)
>DroSec_CAF1 1334 95 - 1
AGUAAGCCCAAUAGAGAGAACAA----UUAUAUACAUUUAUAUAAAGCAAGUUAACUCAACAAAUGGUUGUGUCUUAGUGGGU---AAUAAAUAAAAAAUCA---------------
.....(((((..(((.(.(((..----(((((((....))))))).....(((.....))).....))).).)))...)))))---................--------------- ( -17.20)
>DroSim_CAF1 1339 95 - 1
AGUAAGCCCAAUAGAGAGAAAAA----UUAUAUACAUUUAUAUAAAGCAAGUUAACUCAACAAAUGGUUGUGUCUUAGUGGGU---AAUAAAUAAAAAAUCA---------------
.....(((((...((((......----(((((((....)))))))..........(.((((.....)))).)))))..)))))---................--------------- ( -15.40)
>DroEre_CAF1 2972 106 - 1
AGUAAGCCCAAUAACGAGAA------CUUAUAUACAUUUAUAUAAAGAAAGUUGACUCAACAACUGGUUG--UCUUUGUGGGU---GGAAACCAAUAAAUGAGGAAUAUACAGUGCC
.(((.(((((.(((.((.((------((((((((....)))))))....(((((......))))).))).--)).))))))))---(....)................)))...... ( -20.10)
>consensus
AGUAAGCCCAAUAGAGAGAACAA____UUAUAUACAUUUAUAUAAAGCAAGUUAACUCAACAAAUGGUUG__UCUUAGUGGGU___AAUAAAUAAAAAAUCA_______________
.....((((.(((((((..........(((((((....)))))))............((((.....))))..))))))))))).................................. (-12.14 = -12.95 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:22 2006