Locus 5612

Sequence ID 3R_DroMel_CAF1
Location 14,797,075 – 14,797,171
Length 96
Max. P 0.613305
window9143

overview

Window 3

Location 14,797,075 – 14,797,171
Length 96
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 82.39
Mean single sequence MFE -18.61
Consensus MFE -12.39
Energy contribution -12.25
Covariance contribution -0.14
Combinations/Pair 1.07
Mean z-score -1.81
Structure conservation index 0.67
SVM decision value 0.16
SVM RNA-class probability 0.613305
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14797075 96 + 27905053
AUCCACUGGCUUUGUGCUCUCACCCAACUAUCCCUAUCCCUAUAUACCAAAAACUGUGUGUAGGUAAGUACAACAUUCUAGUU----A-GUUUCUUAAAGA
....((((((((((((((....................(((((((((........)))))))))..)))))))......))))----)-)).......... ( -17.55)
>DroPse_CAF1 2511 100 + 1
GUCAACUGGCUUUGUGCUCUCCCCCAACUAUCCCUAUCCCUAUAUACCAAAAACUGUAUGUAGGUGAGUAGUCCUACAGAUCUAAAGA-AUGCUCAGAACA
(((....)))((((.((..((...............(((((((((((........))))))))).))(((....))).........))-..)).))))... ( -19.70)
>DroSec_CAF1 5557 96 + 1
AUCCACUGGCUUUGUGCUCUCACCCAACUAUCCCUAUCCCUAUAUACCAAAAACUGUGUGUAGGUAAGUACAAGUUCCUAGUU----A-GUUUCUGAAAAA
....((((((((((((((....................(((((((((........)))))))))..)))))))......))))----)-)).......... ( -17.55)
>DroEre_CAF1 12635 96 + 1
AUCCACUGGCUUUGUGCUCUCACCCAACUAUCCCUAUCCCUAUAUACCAAAAACUGUGUGUAGGUGAGUAAAGCUUCCCAGCU----A-CUUUCUCCAAUA
......(((((....(((((((((................(((((((........)))))))))))))...))).....))))----)-............ ( -17.29)
>DroYak_CAF1 12895 92 + 1
AUCCACUGGCUUUGUGCUCUCACCCAACUAUCCCUAUCCCUAUAUACCAAAAACUGUGUGUAGGUGAGUAAAAUAGCC----U----A-GUAUCUUGAAUA
....(((((((...(((((...................(((((((((........))))))))).)))))....))))----.----)-)).......... ( -20.95)
>DroAna_CAF1 2669 97 + 1
GUCUACUGGCUUUGUGCUCUCACCCAACUAUCCCUAUCCCUAUAUACCAAAAACUGUGUGUAGGUGAGUAUCAUUUCAAAGAC----AUCUAGCUCUAAAA
.......((((..(((.(((..................(((((((((........)))))))))((((......)))).))))----))..))))...... ( -18.60)
>consensus
AUCCACUGGCUUUGUGCUCUCACCCAACUAUCCCUAUCCCUAUAUACCAAAAACUGUGUGUAGGUGAGUAAAACUUCCUAGCU____A_GUUUCUCAAAAA
....((((((.....)))....................(((((((((........)))))))))..)))................................ (-12.39 = -12.25 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:20 2006