Locus 5609

Sequence ID 3R_DroMel_CAF1
Location 14,795,878 – 14,795,998
Length 120
Max. P 0.999281
window9138

overview

Window 8

Location 14,795,878 – 14,795,998
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 96.00
Mean single sequence MFE -31.28
Consensus MFE -31.68
Energy contribution -31.10
Covariance contribution -0.58
Combinations/Pair 1.11
Mean z-score -1.60
Structure conservation index 1.01
SVM decision value 3.48
SVM RNA-class probability 0.999281
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14795878 120 + 27905053
UGCGCUCAUAUCGCCAACCUAUCCAGGUGCCUAUCCGAAGGAUAUGUCAUGCACAUAUCAGUUUCUUGGUGAAUCGAAUCAGAGGGUUAGAUUAGAGUUUCGGGAUUUUGAUCUAUUUUU
...((((...((((((((((....))))........(((.(((((((.....)))))))...))).)))))).((......))))))((((((((((((....))))))))))))..... ( -31.00)
>DroPse_CAF1 1260 120 + 1
CACGCUCAUAUCGCCAACCUAUCCAGGUGCCUAUCCGAAGGAUAUGUCGUGCACAUAUCAGUUUCUUGGUGAAUCGAAUCAGAGAGUUAGAUUAGAGUUUCGUGAUUUUGAUCUAUUUUU
...((((...((((((((((....))))........(((.(((((((.....)))))))...))).)))))).((......))))))((((((((((((....))))))))))))..... ( -32.10)
>DroGri_CAF1 47042 120 + 1
CGCACUCAUAUCGCCAACCUAUCCAGGUGCCUAUCCGAAGGAUAUGUCAUGCACAUAUCAAUUUCUUGGUGAAUCGAAUCAGAGAGUUAGAUUAGAGUUUCGUGAUUUUGAUCUGUUUUU
...((((...((((((((((....))))........(((.(((((((.....)))))))...))).)))))).((......))))))((((((((((((....))))))))))))..... ( -31.50)
>DroWil_CAF1 27461 120 + 1
CGCGCUCAUAUCGCCAACCUAUCCAGGUGCCUAUCCGAAGGAUAUGUCAUGCACAUAUCAAUUUCUUGGCGAAUCGAAUCAAAGAGUUAGAUUAGAGUUUCGUGAUUUUGAUCUGUUUUU
...((((...((((((((((....))))........(((.(((((((.....)))))))...))).))))))...(...)...))))((((((((((((....))))))))))))..... ( -30.20)
>DroMoj_CAF1 49794 120 + 1
CGCACUCAUAUCGCCAACCUAUCCAGGUGCCUAUCCGAAGGAUAUGUCAUGCACAUAUCAAUUUCUUGGUGAAUCAAAUCAGAGAGUUAGAUUAGAGUUUCGUGAUUUUGAUCUGUUUUU
...((((...((((((((((....))))........(((.(((((((.....)))))))...))).)))))).((......))))))((((((((((((....))))))))))))..... ( -30.80)
>DroPer_CAF1 1268 120 + 1
CACGCUCAUAUCGCCAACCUAUCCAGGUGCCUAUCCGAAGGAUAUGUCGUGCACAUAUCAGUUUCUUGGUGAAUCGAAUCAGAGAGUUAGAUUAGAGUUUCGUGAUUUUGAUCUAUUUUU
...((((...((((((((((....))))........(((.(((((((.....)))))))...))).)))))).((......))))))((((((((((((....))))))))))))..... ( -32.10)
>consensus
CGCGCUCAUAUCGCCAACCUAUCCAGGUGCCUAUCCGAAGGAUAUGUCAUGCACAUAUCAAUUUCUUGGUGAAUCGAAUCAGAGAGUUAGAUUAGAGUUUCGUGAUUUUGAUCUAUUUUU
...((((...((((((((((....))))........(((.(((((((.....)))))))...))).)))))).((......))))))((((((((((((....))))))))))))..... (-31.68 = -31.10 +  -0.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:16 2006