Locus 5606

Sequence ID 3R_DroMel_CAF1
Location 14,790,947 – 14,791,045
Length 98
Max. P 0.977246
window9133

overview

Window 3

Location 14,790,947 – 14,791,045
Length 98
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 65.64
Mean single sequence MFE -27.12
Consensus MFE -7.62
Energy contribution -7.06
Covariance contribution -0.56
Combinations/Pair 1.30
Mean z-score -2.82
Structure conservation index 0.28
SVM decision value 1.79
SVM RNA-class probability 0.977246
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14790947 98 - 27905053
------------UUCCAUUGCGACACUUUUGUCGCCCUUCUGAACACAUAAUCUUUAGUGGCUCUGUCUGUCUACUGGGGUAAGUCCCCCGGCACCU----------GAUCCUGCCGCCU
------------.......((((((....))))))......................(((((...(((......((((((......)))))).....----------)))...))))).. ( -27.90)
>DroPse_CAF1 47283 117 - 1
UUCUGCUUUGCAUUCAGAGGUGACACUUUUGUCGCC-UUCUGCACAUACAAUCUUUAGUGGGUCUGUCUGUCUACGGCAG--CCUCCUUAGGCCCAUUCCCUUUACCAUUCCCAUUCGCA
....((..((((....(((((((((....)))))))-)).))))............((((((((((.((((.....))))--......))))))))))...................)). ( -32.70)
>DroSim_CAF1 51120 98 - 1
------------UUCCAUUGCGACACUUUUGUCGCCCUUCUGAACACAUAAUCUUUAGUGGCUCUGUCUGUCUACUGGGCUAAGUCCCCCGGCACCU----------GAUCCUGCCGCCU
------------.......((((((....))))))......................(((((...(((......(((((........))))).....----------)))...))))).. ( -24.10)
>DroAna_CAF1 51877 86 - 1
------------UACCAAUGCGACACUUUUGUCGCCCUCCAGUACCCAUAAUCUUUAGUGGCUCUGUCUGUCUGUCG-----------ACAGCACUC----------UUUCCU-CAUCCU
------------.......((((((....))))))....(((...((((........))))..))).(((((....)-----------)))).....----------......-...... ( -18.20)
>DroPer_CAF1 47382 111 - 1
UUCUGCUUUGCAUUCAGAGGUGACACUUUUGUCGCC-UUCUGCACAUAUAAUCUUUAGUGGGUCUGUCUGUCUACGGCAG--CCUCCUUAGGCCCAUUCC------CAUUCCCAUUCGCA
....((..((((....(((((((((....)))))))-)).))))............((((((((((.((((.....))))--......))))))))))..------...........)). ( -32.70)
>consensus
____________UUCCAAUGCGACACUUUUGUCGCCCUUCUGAACACAUAAUCUUUAGUGGCUCUGUCUGUCUACGGCAG__ACUCCCCCGGCACAU__________AUUCCUACCCCCU
...................((((((....))))))......................((((..........))))............................................. ( -7.62 =  -7.06 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:11 2006