Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,789,865 – 14,789,957 |
Length | 92 |
Max. P | 0.945003 |
Location | 14,789,865 – 14,789,957 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 88.01 |
Mean single sequence MFE | -22.56 |
Consensus MFE | -18.07 |
Energy contribution | -18.35 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -2.11 |
Structure conservation index | 0.80 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945003 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14789865 92 - 27905053 AUGGCUGGCAUAAUUAUGCAUAUUAUGUUGCAGGGGGUCGUUCCCUAAGUGCAUAUUUGCGUUGGCUAUUAGGUAAAUUGAGACUAAUUUAU (((((..((.(((.(((((((....((...))(((((....)))))..))))))).))).))..)))))...((((((((....)))))))) ( -25.60) >DroPse_CAF1 46535 85 - 1 CAGGCGGGCAUAAUUAUGCAUAUUAUGUUGCAGGG--AC-----UUAAGUGCAUAUUUGUGUUAGCUAUCAGGUAAAUUGGGUCUAAUUUAU ..(((..((((((.(((((((.(((.(((.....)--))-----.)))))))))).))))))..))).....((((((((....)))))))) ( -23.10) >DroSim_CAF1 50084 87 - 1 AUGGCUGGCAUAGUUAUGCAUAUUAUGUUGCAGGGGGUC-----CUAAGUGCAUAUUUGCGUUAGCUAUUAGGUAAAUUGAGACUAAUUUAU (((((((((.(((.(((((((..........(((....)-----))..))))))).))).)))))))))...((((((((....)))))))) ( -19.70) >DroAna_CAF1 51034 85 - 1 GUGGCAGGCAUAAUUAUGCAUAUUAUGUUGCAGGG--UC-----UUAAGUGCAUAUUUGUGUUAGCCAUCAGGUAAAUUGAGUCUAAUAUAU .((((..((((((.(((((((.(((..........--..-----.)))))))))).))))))..))))((((.....))))........... ( -21.32) >DroPer_CAF1 46647 85 - 1 CAGGCGGGCAUAAUUAUGCAUAUUAUGUUGCAGGG--AC-----UUAAGUGCAUAUUUGUGUUAGCUAUCAGGUAAAUUGGGUCUAAUUUAU ..(((..((((((.(((((((.(((.(((.....)--))-----.)))))))))).))))))..))).....((((((((....)))))))) ( -23.10) >consensus AUGGCGGGCAUAAUUAUGCAUAUUAUGUUGCAGGG__UC_____UUAAGUGCAUAUUUGUGUUAGCUAUCAGGUAAAUUGAGUCUAAUUUAU ..(((..((((((.(((((((...........................))))))).))))))..))).....((((((((....)))))))) (-18.07 = -18.35 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:10 2006