Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,787,558 – 14,787,675 |
Length | 117 |
Max. P | 0.524300 |
Location | 14,787,558 – 14,787,675 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.95 |
Mean single sequence MFE | -31.85 |
Consensus MFE | -18.82 |
Energy contribution | -18.62 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.15 |
Mean z-score | -2.76 |
Structure conservation index | 0.59 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.524300 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14787558 117 - 27905053 UGCCAACACUUAUGCUCAAUAAAUGGGCAUAAAUCUG-GUC--CCGACUCGCUGGCGGCAUUAAAAUGCGUAGCGACACGGUCAAAAAAGCGAAAGCAGCACACAAACAACAAAAACACC .((((....(((((((((.....)))))))))...))-)).--(((..((((((.((.(((....)))))))))))..)))........((....))....................... ( -31.80) >DroPse_CAF1 44184 114 - 1 UGCCAACACUUAUGCCCAAUAAAUGGCCAUAAAUCUG-GGCAGCCGACUCGUUGGCGGCAUUAAAAUGCGCAACGACACGGCCACA---GCCCAGGCUUGACAAAAACAA--ACCUCAGC .(((.....(((((.(((.....))).)))))...((-(((.((((..((((((.((.(((....)))))))))))..))))....---)))))))).............--........ ( -36.10) >DroSec_CAF1 45830 117 - 1 UGCCAACACUUAUGCUCAAUAAAUGGGCAUAAAUCUG-GGC--CCGACUCGCUGGCGGCAUUAAAAUGCGUAGCGACACGGUCAAAAAAGCUAAAGCAGCACACAAACAACAAAAGCAUC .(((.....(((((((((.....))))))))).....-)))--(((..((((((.((.(((....)))))))))))..)))........(((.....))).................... ( -30.80) >DroSim_CAF1 47819 117 - 1 UCCCAACACUUAUGCUCAAUAAAUGGGCAUAAAUCUG-GGC--CCGACUCGCUGGCGGCAUUAAAAUGCGUAGCGACACGGUCAAAAAAGCUAAAGCAGCACACAAACAACAAAAGCAUC .((((....(((((((((.....)))))))))...))-)).--(((..((((((.((.(((....)))))))))))..)))........(((.....))).................... ( -30.50) >DroAna_CAF1 48548 112 - 1 UGCCAACACUUAUGCUCAAUAAAUGGCCAUAAAUCUGUGGA--CCGACUCGUUGGCGGCAUUAAAAUGCGUAGCGACACGGCCAAAA---CGAGA---GACCGAGAACAACAAAAACAUG ..............(((......((((((((....))))).--))).(((((((((.((((....))))((....))...))))..)---)))).---....)))............... ( -25.80) >DroPer_CAF1 44289 114 - 1 UGCCAACACUUAUGCCCAAUAAAUGGCCAUAAAUCUG-GGCAGCCGACUCGUUGGCGGCAUUAAAAUGCGCAACGACACGGCCACA---GCCCAGGCUUGACAAAAACAA--ACCCCAGC .(((.....(((((.(((.....))).)))))...((-(((.((((..((((((.((.(((....)))))))))))..))))....---)))))))).............--........ ( -36.10) >consensus UGCCAACACUUAUGCUCAAUAAAUGGCCAUAAAUCUG_GGC__CCGACUCGCUGGCGGCAUUAAAAUGCGUAGCGACACGGCCAAAA__GCCAAAGCAGCACAAAAACAACAAAAACAUC .(((.....(((((.(((.....))).)))))......)))..(((..((((((.((.(((....)))))))))))..)))........((....))....................... (-18.82 = -18.62 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:08 2006