Locus 5602

Sequence ID 3R_DroMel_CAF1
Location 14,786,668 – 14,786,788
Length 120
Max. P 0.769676
window9129

overview

Window 9

Location 14,786,668 – 14,786,788
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 80.00
Mean single sequence MFE -31.12
Consensus MFE -14.04
Energy contribution -16.25
Covariance contribution 2.21
Combinations/Pair 1.15
Mean z-score -2.23
Structure conservation index 0.45
SVM decision value 0.53
SVM RNA-class probability 0.769676
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14786668 120 - 27905053
GUCGAUUUCGACUUUCUAAUUGAGCAAUUUCCUUUGGAUAAUUGCUUUUGCGCACUGUCGCAUUCGGACUUGGAUUCAAAUUCAGCUGCAAAUGCAGAAUCAGAUUGCGAUUGCGAUUCA
((((....)))).........(((((((((((...))).))))))))...((((..((((((.((.((.((((((....))))))((((....))))..)).)).))))))))))..... ( -35.90)
>DroSec_CAF1 44927 120 - 1
GUCGAUUUCGACUUUCUAAUUGAGCAAUUUCCUUUGGAUAAUUGCUUUUGCGCACUGUCGCAUUUGGACUUGGAUUCGGAUUCAGCUGCAAAUGCAGAAUCAGAUUGCGAUUGCGAUUCA
((((....)))).........(((((((((((...))).))))))))...((((..(((((((((((..((((((....))))))((((....))))..))))).))))))))))..... ( -36.00)
>DroSim_CAF1 46927 120 - 1
GUCGAUUUCGACUUUCUAAUUGAGCAAUUUCCUUUGGAUAAUUGCUUUUGCGCACUGUCGCAUUUGAACUUGGAUUCAGAUUCAGCUGCAAAUGCAGAAUCAGAUUGCGAUUGCGAUUCA
((((....)))).........(((((((((((...))).))))))))...((((..(((((((((((..((((((....))))))((((....))))..))))).))))))))))..... ( -36.90)
>DroAna_CAF1 47604 120 - 1
UUCGAUUUGGACUUUCUAAUUGAGCAAUUUCCUUUAGAUAAUUGCUUUUGCGCACUGGCGGAUUCGCAUUUGGAUUUUGAUUUUGAUUCUGUUGCUGAUUCUGUUUCUGAUUCCCAUUCA
...((..(((...........((((((((..(....)..)))))))).....((..((((((.(((((...(((((........)))))...))).)).))))))..))....))).)). ( -25.70)
>DroPer_CAF1 43044 94 - 1
CUCGAUUUCCACU-CCUAAUUGAGCAAUUUCCUUUGGUUAAUUGCU-UUGCGCGCUGACGGAUUUGGACUUGGAUUCAGAUUCCGAUU------------------------CCGAUUCA
.((((((......-...))))))((((((..(....)..)))))).-.............((.(((((.(((((.......))))).)------------------------)))).)). ( -21.10)
>consensus
GUCGAUUUCGACUUUCUAAUUGAGCAAUUUCCUUUGGAUAAUUGCUUUUGCGCACUGUCGCAUUUGGACUUGGAUUCAGAUUCAGCUGCAAAUGCAGAAUCAGAUUGCGAUUGCGAUUCA
...((..(((((.........((((((((((.....)).)))))))).........)))(((.(((...((((((....))))))((((....))))..........))).))))).)). (-14.04 = -16.25 +   2.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:07 2006