Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 2,091,018 – 2,091,109 |
Length | 91 |
Max. P | 0.525001 |
Location | 2,091,018 – 2,091,109 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 88.94 |
Mean single sequence MFE | -31.75 |
Consensus MFE | -29.13 |
Energy contribution | -29.07 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.15 |
Mean z-score | -1.15 |
Structure conservation index | 0.92 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525001 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2091018 91 + 27905053 UAUUGGCAUCCAGUGUGGAGCAGGAGGGCGAACUUCUGUUGAGAAACUUCCAGGACCCCCACCGAAUGGAGGGCUGGCAGGCGGUGGACGU .....((.((((.(((..((((((((......))))))))......((.((((..((((((.....))).))))))).))))).)))).)) ( -32.70) >DroSec_CAF1 233898 91 + 1 UAUUGGCAGCCAGUGUGGAGCAGGAGGGCGAACUUCUGUUGAGAAACUUCCAGGAUCCUCACCGAAUGGAAGGCUGGCAGGCGGUGGAUGU (((((.(.((((((....((((((((......))))))))......((((((...((......)).)))))))))))).).)))))..... ( -32.30) >DroSim_CAF1 236919 91 + 1 UAUUGGCAGCCAGUGUGGAGCAGGAGGGCGAACUUCUGUUGAGAAACUUCCAGGAUCCUCACCGAAUGGAAGGCUGGCAGGCGGUGGAUGU (((((.(.((((((....((((((((......))))))))......((((((...((......)).)))))))))))).).)))))..... ( -32.30) >DroEre_CAF1 235261 91 + 1 UACUGGCAGCCACUGUGCAGCAGGAAGGCGAACUCCUGUUGAGUAACUUCCAGGAUCCCCACCGAAUGGAGGGAUGGCAGGCGGUGGACGU .....((..(((((((.((((((((.(.....))))))))).....((.(((...((((..((....)).))))))).)))))))))..)) ( -32.70) >DroYak_CAF1 237753 91 + 1 UAUUGGCAGCCAGUGUGGAGCAGGAAGGCGAACUCCUGUUGAGAAACUUCCAGGAUCCCCACCGAAUGGAGGGCUGGCAGGCGGUGGACGU (((((.(.((((((....(((((((.(.....))))))))......((((((...((......)).)))))))))))).).)))))..... ( -30.90) >DroAna_CAF1 210737 91 + 1 UAUUGGCAGCCAGUUUAGAGCAGGAGGGUGGCCUUCUGAUGCGAAACUUUCAGGAUGUCAGUGGAAUGAAAGGCUGGCAGGCGGUGGACGU (((((.(.((((((...(..(((((((....)))))))...)....((((((.....((....)).)))))))))))).).)))))..... ( -29.60) >consensus UAUUGGCAGCCAGUGUGGAGCAGGAGGGCGAACUUCUGUUGAGAAACUUCCAGGAUCCCCACCGAAUGGAAGGCUGGCAGGCGGUGGACGU (((((.(.((((((....((((((((......))))))))......((((((..............)))))))))))).).)))))..... (-29.13 = -29.07 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:03 2006