| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,783,620 – 14,783,719 |
| Length | 99 |
| Max. P | 0.999859 |
| Location | 14,783,620 – 14,783,719 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 76.98 |
| Mean single sequence MFE | -25.21 |
| Consensus MFE | -15.12 |
| Energy contribution | -18.00 |
| Covariance contribution | 2.88 |
| Combinations/Pair | 1.05 |
| Mean z-score | -3.99 |
| Structure conservation index | 0.60 |
| SVM decision value | 4.28 |
| SVM RNA-class probability | 0.999859 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14783620 99 - 27905053 UGCCC------AUGGCCACAUUUCCACUCACACACCACCCGG----CUCCCU---UACGCACUUCAUCA---AGAGUGACUCGAGUGGGAAUUCGGCCAAAAAUCACAACCCAUA .....------.(((((..((((((((((.....((....))----......---....(((((.....---.)))))....))))))))))..)))))................ ( -28.50) >DroSec_CAF1 41956 90 - 1 -----------AUGGCC--AUUUCCACUCA--CACCACCCGG----CUCCCU---UACGCACUUCAUCA---CGAGUGACUCGAGUGGGAAUUCGGCCAAAAAUCACAACCCAUA -----------.(((((--((((((((((.--..((....))----......---....(((((.....---.)))))....))))))))))..)))))................ ( -27.50) >DroSim_CAF1 43955 90 - 1 -----------AUGGCC--AUUUCCACUCA--CACCAACUGG----CUCCCU---UACGCACUUCAUCA---CGAGUGACUCGAGUGGGAAUUCGGCCAAAAAUCACAACCCAUA -----------.(((((--((((((((((.--..((....))----......---....(((((.....---.)))))....))))))))))..)))))................ ( -27.80) >DroYak_CAF1 52896 101 - 1 UACCCUUGCCCAUGCCC--AUGCCCACUCA--CACCACCCGG----CUCACU---CACGCACUUCAUCA---AGAGUGACUCGAGUGGGGAUUCGGCCAAAAAUCACAACCCAUA .............(((.--((.(((((((.--..((....))----.(((((---(.............---.))))))...))))))).))..))).................. ( -25.74) >DroAna_CAF1 44474 100 - 1 CGCCC------AUAA-------ACCACCCA--CACAAACAGCCCCAAUCCCGUGGCACUCACUUCAUCAGAAAGUGUCCCUCGAGUGGGAAUUUGCCCAAAAAUCACAACCAAUA .....------....-------....((((--(.......(((.(......).)))...((((((....).)))))........))))).......................... ( -16.50) >consensus __CCC______AUGGCC__AUUUCCACUCA__CACCACCCGG____CUCCCU___UACGCACUUCAUCA___AGAGUGACUCGAGUGGGAAUUCGGCCAAAAAUCACAACCCAUA ............(((((..((((((((((.....((....)).................(((((.........)))))....))))))))))..)))))................ (-15.12 = -18.00 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:02 2006