| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,780,929 – 14,781,049 |
| Length | 120 |
| Max. P | 0.582585 |
| Location | 14,780,929 – 14,781,049 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.39 |
| Mean single sequence MFE | -39.20 |
| Consensus MFE | -28.50 |
| Energy contribution | -30.33 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.14 |
| Mean z-score | -3.04 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582585 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14780929 120 - 27905053 GUGUGUGUGUGGCAGGACAAUAGCCGCAUAAAUGCUCGAGCACUGCUUUAAGCCUGUCGCCGUGUUGUUGCGCUGUCUUGCCAUGUCACAAGUCAAAAGUGCAUUAAAAUAAUUGCACUU ...((((((((((((((((...((.(((.....((.((.((((.((.....))..)).)))).))...))))))))))))))))).))))......(((((((..........))))))) ( -41.50) >DroSec_CAF1 39335 120 - 1 UUGUGUGUGUGGCAGGACAAUAGCCGCAUAAAUGCUCGAGCAGUGCUUUAAGCCUGUCGCCGUGUUGUUGCGCUGUCUUGCCAUGUCACGAGUCAAAAGUGCAUUAAAAUAAUUGCACUU (((((.(..((((((((((...((.(((..(((((.(((.(((.((.....))))))))..)))))..)))))))))))))))..)))))).....(((((((..........))))))) ( -44.70) >DroSim_CAF1 41341 116 - 1 ----GUGUGUGGCAGGACAAUAGCCGCAUAAAUGCUCGAGCAGUGCUUUAAGCCUGUCGCCGUGUUGUUGCGCUGUCUUGCCAUGUCACAAGUCAAAAGUGCAUUAAAAUAAUUGCACUU ----(((((((((((((((...((.(((..(((((.(((.(((.((.....))))))))..)))))..))))))))))))))))).))).......(((((((..........))))))) ( -43.40) >DroEre_CAF1 39758 120 - 1 AUGUGUGUGUGGCAGGACAAUAGCCGCAUAAAUGCUCGAGCACUGCUUUAAGCCUGUCGCCGUGUUGUUGCGCUGUCUUGCCAUGUCACAAGUCAAAAGUGCAUUAAAAUAAUUGCACUU .((((.(..((((((((((...((.(((.....((.((.((((.((.....))..)).)))).))...)))))))))))))))..)))))......(((((((..........))))))) ( -41.60) >DroYak_CAF1 48832 118 - 1 AU--GUGUGUGGCAGGACAAUAGCCGCAUACAUGCUCGAGCACUGCUUUAAGCCUGUCGCCGUGUUGUUGCGCUGUCUUGCCAUGUCAAAAGUCGAAAGUGCAUUAAAAUAAUUGCACUU .(--(.(..((((((((((...((.(((.(((.((.((.((((.((.....))..)).)))).))))))))))))))))))))..)))........(((((((..........))))))) ( -38.80) >DroAna_CAF1 41585 98 - 1 -------------GAGACAAUGGCAGCAUAAAUGCUUCAACAGUGCUUUAAGCCUC---------UGCCACACUGCCUUGCCAUGUCAAAAGUCAAAAGUGCAUUAAAAUAAUUGCACUU -------------..((((.((((((((....))).....(((((......((...---------.))..)))))...))))))))).........(((((((..........))))))) ( -25.20) >consensus _U__GUGUGUGGCAGGACAAUAGCCGCAUAAAUGCUCGAGCACUGCUUUAAGCCUGUCGCCGUGUUGUUGCGCUGUCUUGCCAUGUCACAAGUCAAAAGUGCAUUAAAAUAAUUGCACUU ....(((((((((((((((.((((.((((...(((....)))..((.....))........)))).))))...)))))))))))).))).......(((((((..........))))))) (-28.50 = -30.33 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:59:00 2006