Locus 5596

Sequence ID 3R_DroMel_CAF1
Location 14,779,740 – 14,779,838
Length 98
Max. P 0.521350
window9121

overview

Window 1

Location 14,779,740 – 14,779,838
Length 98
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 85.44
Mean single sequence MFE -26.18
Consensus MFE -12.62
Energy contribution -13.02
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -3.05
Structure conservation index 0.48
SVM decision value -0.02
SVM RNA-class probability 0.521350
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14779740 98 - 27905053
AAAAUUCAAAUUGGCUAAUCAGCCAUAAGG------CCCAAGGCCUUCGCU-AUAUGCCAAUUCCAUUUGGAAUUUGGAAAUAAGGUAUUUGGCGAAAAACAGUG
...........(((((....)))))...((------((...))))((((((-(.(((((..(((((.........)))))....))))).)))))))........ ( -30.30)
>DroSec_CAF1 38309 97 - 1
AAAAUUCAUAUUGGCUAAUCAGCCAUAAGG------CCCAAGGGCUUCGCU-CUAUGCCAAUUCCAUUAG-AAAUUGGAAAUAAAUUAUUUGGCUAACAGCAGUG
...........(((((....)))))..(((------((....))))).(((-....((((((((((....-....))))).........)))))....))).... ( -25.80)
>DroSim_CAF1 40168 96 - 1
AAAAUUCAAAUUGGCUAAUCAGCCAUAAGG------CCCAAGGCCUUCGCU-GUAUGCCAAUUCCAUUAG-AAAUUGGAAAUAAG-UAUUUGGCUAACAGCAGUG
...........(((((....))))).((((------((...)))))).(((-((..((((((((((....-....))))).....-...)))))..))))).... ( -30.80)
>DroEre_CAF1 38573 90 - 1
AAAAUUCAAAUUGGCUAAUCAGCCAGAAGG------CCCAGGGC-UU--CU-CUAUGCCAAUUCCAUUAG-AAAUUGGAAAUAAGGUAUUU-GCGAA---CAGUG
....(((....(((((....)))))((((.------(....).)-))--).-..(((((..(((((....-....)))))....)))))..-..)))---..... ( -21.10)
>DroYak_CAF1 47624 98 - 1
CAAAUUCAAAUUGGCUAAUCAGCCAUAAAGCCAAGACCCAAUGC-UU--CUAAUAUGCCAAUUCCAUUAG-AAAUGGGAAAAAAGGUAUUUGGCGAA---CAGUG
....(((....(((((....)))))....(((((((((....((-..--.......))...((((((...-..)))))).....))).)))))))))---..... ( -22.90)
>consensus
AAAAUUCAAAUUGGCUAAUCAGCCAUAAGG______CCCAAGGCCUUCGCU_AUAUGCCAAUUCCAUUAG_AAAUUGGAAAUAAGGUAUUUGGCGAA_A_CAGUG
...........(((((....)))))...............................((((((((((.........))))).........)))))........... (-12.62 = -13.02 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:59 2006