| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,779,234 – 14,779,347 |
| Length | 113 |
| Max. P | 0.535418 |
| Location | 14,779,234 – 14,779,347 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.86 |
| Mean single sequence MFE | -33.27 |
| Consensus MFE | -16.41 |
| Energy contribution | -17.94 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.535418 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14779234 113 - 27905053 GAUAGACUGGCUGUA-------GCUAAGUGAGAAUGACUUGAACUUUGGGAACUACUCGUAAUUGAUUGGCUCAGCCAGUUUGUAUUAGCUUUUUCACGCAGGAGAUGCCAGCUAAAAGG .((((((((((((.(-------(((((..((..((((((..(...)..))......))))..))..)))))))))))))))))).((((((.((((......))))....)))))).... ( -34.10) >DroSec_CAF1 37805 113 - 1 GAUAGACUGGCUGUA-------GCUAAGUGAGAAUGACUUCAACUUUGGCAACUAUUCGUAAUUGAUUGGCUCAGCCAGUUUGUAUUAGCUUUUCCAGGCAGGAGAUGCCAGCUAAAAGG .((((((((((((.(-------(((((.((((......)))).....(....).............)))))))))))))))))).((((((......((((.....)))))))))).... ( -37.30) >DroSim_CAF1 39660 113 - 1 GAUAGACUGGCUGUA-------GCUAAGUGGGAAUGACUUCAACUUUGGCAACUAUUCGUAAUUGAUUGGCUCAGCCAGUUUGUAUUAGCUUUUCCACGCGGGAGAUGCCAGCUAAAAGG .((((((((((((.(-------(((((.((.(((((...(((....)))....))))).)).....)))))))))))))))))).(((((((((((.....)))))....)))))).... ( -37.90) >DroEre_CAF1 38076 111 - 1 GAUAGACUGGCUGUAGAAACUGGCUAAGUGAGAAUGACUUCAACUUUGGGAACUACUCGUAAUUGAUUGGCUCAGCCAGUUUCUAUUAGCUUUUCCAGGCGGGAGAUGCCA--------- ....((..(((((((((((((((((.(((.((.......((((...((((.....))))...)))))).))).)))))))))))).)))))..))..((((.....)))).--------- ( -37.61) >DroYak_CAF1 47129 113 - 1 GAUAGACUGGCUGUA-------GCUAAGUGAGAAUGACUUCAACUUUGGGAACUACUCGUAAUUGAUUGGCUUAGCCAGUUUCUAUUAGCUUUUCGUGGCGGGAGAUGCCAGCUAAAAGG (((((((((((((.(-------(((((((.......)).((((...((((.....))))...)))))))))))))))))..))))))..(((((.((((((.....))))).).))))). ( -33.10) >DroAna_CAF1 39996 95 - 1 GAUGGAU-----G------------AAACGAAAAUGACUUCCACUGUG--------UGGUAAUUGAUUGACUUGGCUAAUUUGUGUCAAGUUUAGAGCGGUGAGAGUGCGGGCUAAUUGG ..((((.-----.------------..............))))(((..--------(....((((...((((((((........)))))))).....))))....)..)))......... ( -19.59) >consensus GAUAGACUGGCUGUA_______GCUAAGUGAGAAUGACUUCAACUUUGGGAACUACUCGUAAUUGAUUGGCUCAGCCAGUUUGUAUUAGCUUUUCCACGCGGGAGAUGCCAGCUAAAAGG .((((((((((((.........(((((.(((..((((...................))))..))).))))).))))))))))))....((.(((((.....))))).))........... (-16.41 = -17.94 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:58 2006