Locus 5594

Sequence ID 3R_DroMel_CAF1
Location 14,778,822 – 14,778,935
Length 113
Max. P 0.787567
window9119

overview

Window 9

Location 14,778,822 – 14,778,935
Length 113
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.49
Mean single sequence MFE -27.90
Consensus MFE -21.40
Energy contribution -20.64
Covariance contribution -0.76
Combinations/Pair 1.22
Mean z-score -1.92
Structure conservation index 0.77
SVM decision value 0.58
SVM RNA-class probability 0.787567
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14778822 113 - 27905053
GAAAAAGUUGCAGCAUAUUUUUAACAAUAUUUUCCCAGCUCAUAUCACAUGACGUGGACACGCUGGCUACUUUCUACUG-------GCAAAAGCCAAUGCUGCUGCGGAAAGCCUUCAAA
(((...((.(((((((..................(((((.....((((.....))))....)))))...........((-------((....))))))))))).))((....)))))... ( -29.50)
>DroSec_CAF1 37406 113 - 1
GAAAAAGUUGCAGCAUUUUUCUAACAAUAUUUUCCCAGCUCAUAUCACAUGACGUGGACACGCUGGCUACUUUCUACAU-------GCAAAAGCCAAAGCUGCUGCAGAAAGCCUGCAAA
.......((((((.....................(((((.....((((.....))))....)))))...((((((....-------(((..(((....)))..))))))))).)))))). ( -26.90)
>DroSim_CAF1 39261 113 - 1
GAAAAAGUUGCAGCAUUUUUCUAACAAUAUUUUCCCAGCUCAUAUCACAUGACGUGGACACGCUGGCUACUUUCUACGG-------GCAAAAGCCAAAGCUGCUGCAGAAAGCCUUCAAA
(((....((((((((.((((..............(((((.....((((.....))))....)))))............(-------((....))))))).))))))))......)))... ( -27.00)
>DroEre_CAF1 37672 120 - 1
GAAAAAGUUGCAGCGCUUUUCUAACAAUAUUUUCCCAGCUCAUAUCACAUGACGUGGACACGCUGGCUACUUUCUACUGGCAACUGGCAAAAGCCAAAGCUGCUGCAACAAGCCUUCAAA
......(((((((((((((...............(((((.....((((.....))))....)))))............(....).(((....)))))))).))))))))........... ( -33.40)
>DroYak_CAF1 46722 113 - 1
GAAAAAGUUGCAGCAUUUUUCUAACAAUAUCUUCCCAGCUUAUAUCACAUGACGUGGACACGAUGGCUACUUUCUACUG-------GCAAAAGCCAAAGCUGCUGCAGAAAGCCUUCAAA
(((....((((((((.....................((((....((((.....)))).......)))).........((-------((....))))....))))))))......)))... ( -22.70)
>consensus
GAAAAAGUUGCAGCAUUUUUCUAACAAUAUUUUCCCAGCUCAUAUCACAUGACGUGGACACGCUGGCUACUUUCUACUG_______GCAAAAGCCAAAGCUGCUGCAGAAAGCCUUCAAA
.......((((((((((((...............(((((.....((((.....))))....)))))....................((....)).)))).))))))))............ (-21.40 = -20.64 +  -0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:57 2006