Locus 5593

Sequence ID 3R_DroMel_CAF1
Location 14,776,655 – 14,776,774
Length 119
Max. P 0.810676
window9118

overview

Window 8

Location 14,776,655 – 14,776,774
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 75.66
Mean single sequence MFE -23.85
Consensus MFE -15.99
Energy contribution -16.43
Covariance contribution 0.44
Combinations/Pair 1.19
Mean z-score -1.71
Structure conservation index 0.67
SVM decision value 0.65
SVM RNA-class probability 0.810676
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14776655 119 - 27905053
UUGAUAUUAAAUGGAAAUGCAGCAUUGUAAGUGUG-GCAAUAAAUAAUUCAAUACACAGCACGGAGUGACUUUCAUUUUAGUUGUUAUACAAGUGAAUUCCAUUUAAUAAUUUCAUUCGU
....((((((((((((.(((.((((.....)))).-)))........((((....(((((..((((((.....)))))).)))))........))))))))))))))))........... ( -26.40)
>DroSim_CAF1 37125 119 - 1
UUGAUAUUAAAUGGAAAUGCUGCAUUGUAAGUGUGUGAAAUAAAUAAUUCAGUACGCAACAU-GAGUGACUUUCAUUUUAGUUGUUAUACAAGUGAAUUCCAUUUAAUAAUUUGAUUCGU
....((((((((((((...(.((.(((((.(((((((((........)))).)))))((((.-(((((.....)))))....)))).))))))))..))))))))))))........... ( -26.80)
>DroEre_CAF1 35592 97 - 1
UUUAUGUUAAGUGGAAACGCA----------------------AUAAUUUAAUACACAACAC-GAGUGGCUUUCAUAUUAGUUGUUAUUCAAGGAAAUCCCAUUUGAUAAUUCCAUUCGU
..........(((....))).----------------------.................((-((((((..........((((((((.....((....))....)))))))))))))))) ( -18.90)
>DroYak_CAF1 44554 115 - 1
CUGAUGUUAAAUGGAAGCGCAGCAUUGUAAGUGUGC-CUAUAAAUAAUUUAAUACGCAACUC-UAUUGGCUCUCAUAUUAGUUGUUAU---AAGAAAUUCCAUUUAAUAUUUCCAUUCGU
..(((((((((((((((((((.(.......))))))-..........(((.(((.((((((.-...((.....))....)))))))))---.)))..))))))))))))))......... ( -23.30)
>consensus
UUGAUAUUAAAUGGAAACGCAGCAUUGUAAGUGUG__CAAUAAAUAAUUCAAUACACAACAC_GAGUGACUUUCAUAUUAGUUGUUAUACAAGGAAAUUCCAUUUAAUAAUUCCAUUCGU
....((((((((((((.....((((.....)))).....................(((((...(((((.....)))))..)))))............))))))))))))........... (-15.99 = -16.43 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:56 2006