Locus 5591

Sequence ID 3R_DroMel_CAF1
Location 14,774,694 – 14,774,807
Length 113
Max. P 0.551528
window9113

overview

Window 3

Location 14,774,694 – 14,774,807
Length 113
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.07
Mean single sequence MFE -30.73
Consensus MFE -18.35
Energy contribution -18.88
Covariance contribution 0.53
Combinations/Pair 1.08
Mean z-score -1.97
Structure conservation index 0.60
SVM decision value 0.04
SVM RNA-class probability 0.551528
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14774694 113 + 27905053
AGUU-----AGAGGAGCAGAAUCCCCCCCCUGCUCAGCUGCCUAAUGUGGCAGAA-GCGAAGGCAAACAAAAGCGGUGCCAUUUCAAAAGAAAUCAAUGACAAUUCGUUAAAGUUCC-UC
....-----.(((((((....................(((((......))))).(-(((((((((..(....)...))))(((((....))))).........))))))...)))))-)) ( -30.70)
>DroPse_CAF1 31975 102 + 1
GGUU-----CUGGGAGG------------CAGCUCAGCUGCCUAAUGUGGCAGAAGGCAAAGGCAAACAAAAGCGGCGCCAUUUCAAAAGAAAUCAAUGACAAUUCGUUAAAUGUAC-CC
....-----..(((.((------------(.(((...(((((......)))))..)))....((........))...)))(((((....))))).(((((....))))).......)-)) ( -25.50)
>DroEre_CAF1 33736 108 + 1
ACUU-------AGGAGGAGAAUCC----CCCGCUCAGCUGCCUAAUGUGGCAGAA-GCGAAGGCAAACAAAAGCGGUGCCAUUUCAAAAGAAAUCAAUGACAAUUCGUUAAAGGCCCCCC
....-------.((.((.......----.(((((...(((((......)))))..-((....)).......))))).((((((((....))))).(((((....)))))...))))))). ( -31.00)
>DroYak_CAF1 42627 105 + 1
AGUU-------AGCAGGAGAAUCC----CCUGCUCAGCUGCCUAAUGUGGCAGAA-GCGAAGGCAAACAAAAGCGGUGCCAUUUCAAAAGAAAUCAAUGACAAUUCGUUAAAGGCCC---
.(((-------((((((.......----))))))...(((((......)))))..-((....)).)))......((.((((((((....))))).(((((....)))))...)))))--- ( -30.90)
>DroAna_CAF1 35982 114 + 1
CGGGAAAUUGGGGAAACCUCGGCU----GCUGCUCAGCUGCCUAAUGUGGCAGAA-GCGAAGGCAAACAAUAGCGGCGCCAUUUCAAAAGAAAUCAAUGACAAUUCGUUAAAGGUCC-CC
.((((..(((((....))).(((.----((((((...(((((......)))))..-((....)).......)))))))))(((((....))))).(((((....))))).))..)))-). ( -40.60)
>DroPer_CAF1 32069 102 + 1
GGUU-----CUGGGAGG------------CAGCUCAGCUGCCUAAUGUGGCAGAAGGCAAAGGCAAACAAAAGCGGCGCCAUUUCAAAAGAAAUCAAUGACAAUUCGUUAAACGUAC-CC
(((.-----(((..(((------------(.(((...(((((......)))))..)))....((........))...))).)..)).........(((((....)))))....).))-). ( -25.70)
>consensus
AGUU_______AGGAGGAGAAUCC____CCUGCUCAGCUGCCUAAUGUGGCAGAA_GCGAAGGCAAACAAAAGCGGCGCCAUUUCAAAAGAAAUCAAUGACAAUUCGUUAAAGGUCC_CC
.............................(((((...(((((......)))))...((....)).......))))).((((((((....))))).(((((....)))))...)))..... (-18.35 = -18.88 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:52 2006