| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,772,640 – 14,772,741 |
| Length | 101 |
| Max. P | 0.628025 |
| Location | 14,772,640 – 14,772,741 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 81.40 |
| Mean single sequence MFE | -17.29 |
| Consensus MFE | -10.70 |
| Energy contribution | -11.34 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.628025 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14772640 101 + 27905053 AAAACACACAAAACUUUAGAAAACGUUGGAAAAACAAACAUUAACCCUCGGUCAAAACCCAGUUAAAAAAGAGAGUCGGGGAUUUGGCUGA---UUGUAAAAAA----- .......((((.............(((.....)))............(((((((((.(((..................))).)))))))))---))))......----- ( -16.37) >DroSec_CAF1 31438 101 + 1 AAAACACACAAUACUCUAGAAAACGUUGGAAAAACAAACAUUAACCCUCAGUCAAAACCCAGUUAAAAAAGAGAGUCGGGGAUUUGGCUGA---UUGUAAAAAA----- .......((((...(((((......))))).................(((((((((.(((..................))).)))))))))---))))......----- ( -17.37) >DroSim_CAF1 33149 101 + 1 AAAACACACAAAACUCUAGAAAACGUUGGAAAAACAAACAUUAACCCUCAGUCAAAACCCAGUUAAAAAUGAGAGUCGGGGAUUUGGCUGA---UUGUAAAAAA----- .......((((...(((((......))))).................(((((((((.(((..................))).)))))))))---))))......----- ( -17.57) >DroEre_CAF1 31789 99 + 1 GAAGCACACAA-ACUCUAGAAAGCGCUG-AAAAACAAACAUUAACCCUCGGUCAGAACCCAUUUAAAAAAGAGAGUCGGGGAUUUGGCUGA---UUGUAAAAAA----- ..(((.(....-..........).))).-..............((..(((((((((.(((((((........)))).)))..)))))))))---..))......----- ( -17.14) >DroYak_CAF1 40666 100 + 1 AAAGCACACAAAACUCUAGAAAGCGCUG-AAAAACAAACAUUAACCCUCAGUCAGAACCCAUUUAAAAAAGAGAGUCGGGGAUUUGGCUGA---UUGUAAAAAA----- ..(((.(...............).))).-..............((..(((((((((.(((((((........)))).)))..)))))))))---..))......----- ( -17.76) >DroAna_CAF1 33794 92 + 1 UGCUUAAACAAACCU-UGCAGA-----GAAAAAACAAAC--UAA---------AAGAACCUUUUGGAAAAAAGAGUCGGGGAUUUGUUUGAAGCUUGUAAAAAAACGAA .((((((((((((((-(((...-----(......)...(--(((---------(((...)))))))........).))))).)))))))).)))((((......)))). ( -17.50) >consensus AAAACACACAAAACUCUAGAAAACGUUGGAAAAACAAACAUUAACCCUCAGUCAAAACCCAGUUAAAAAAGAGAGUCGGGGAUUUGGCUGA___UUGUAAAAAA_____ .........................................(((...(((((((((.(((..................))).)))))))))...)))............ (-10.70 = -11.34 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:51 2006