Locus 5588

Sequence ID 3R_DroMel_CAF1
Location 14,769,619 – 14,769,723
Length 104
Max. P 0.743199
window9109

overview

Window 9

Location 14,769,619 – 14,769,723
Length 104
Sequences 5
Columns 106
Reading direction reverse
Mean pairwise identity 89.50
Mean single sequence MFE -32.06
Consensus MFE -23.92
Energy contribution -24.68
Covariance contribution 0.76
Combinations/Pair 1.14
Mean z-score -1.88
Structure conservation index 0.75
SVM decision value 0.46
SVM RNA-class probability 0.743199
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14769619 104 - 27905053
UGUGCACCGCAAUGGGGCAUUUACAUUUCAGAUGUCCUCAUGCUGCCAGUGUAUGCGU--GAUGUGUAAGGGAGAUGCAACAAUAUGCAUUCACUUGGUUGAUUAA
........(((..(((((((((.......)))))))))..))).(((((((.((((((--(.((((((.......))).))).))))))).))).))))....... ( -31.20)
>DroSec_CAF1 28486 106 - 1
UGUGCACCGCAAUGGGGCAUUUACAUUUCAGAUGUCCUCAUGCUGCCAGUGUAUGCGUAUGAUGUGUAGGGGAGAUGCAACAAUAUGCAUUCACUUGGUUGAUUAA
........(((..(((((((((.......)))))))))..))).(((((((.((((((((....((((.......))))...)))))))).))).))))....... ( -32.70)
>DroSim_CAF1 30200 104 - 1
UGUGCACCGCAAUGGGGCAUUUACAUUUCAGAUGUCCUCAUGCUGCCAGUGUAUGCGU--GCUGUGCAAAGGAGAUGCAACAAUAUGCAUUCACUUGGUUGAUUAA
........(((..(((((((((.......)))))))))..))).(((((((.((((((--(.((((((.......))).))).))))))).))).))))....... ( -33.20)
>DroEre_CAF1 28734 104 - 1
UGUACUCCGCAAUGGGCCAUUUACAUUUCAGAUGUCCUGAUGCCGCAAGUGUGUGCGU--GCUGUGCCAAGGAGUUGCAACAAUAUGCAUUCACUUGCUUGAUUAG
........(((.((((.(((((.......))))).)))).))).(((((((.((((((--(.(((((.........)).))).))))))).)))))))........ ( -31.70)
>DroYak_CAF1 37643 102 - 1
--UACUCCGCAAUGGGGCAUUUACAUUUCAAAUGUCCCGAUGCUGCAAGUGUAUGCGU--GGUGUGCAAAGGAGAUUCAACAAUAUGCAUUCAGUUGGUUGAUUAG
--..(((((((.((((((((((.......)))))))))).)))......(((((((..--.)))))))..))))..(((((....((....))....))))).... ( -31.50)
>consensus
UGUGCACCGCAAUGGGGCAUUUACAUUUCAGAUGUCCUCAUGCUGCCAGUGUAUGCGU__GAUGUGCAAAGGAGAUGCAACAAUAUGCAUUCACUUGGUUGAUUAA
........(((..(((((((((.......)))))))))..))).(((((((.((((((......((((.......)))).....)))))).))).))))....... (-23.92 = -24.68 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:48 2006