Locus 5587

Sequence ID 3R_DroMel_CAF1
Location 14,768,509 – 14,768,613
Length 104
Max. P 0.858134
window9108

overview

Window 8

Location 14,768,509 – 14,768,613
Length 104
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 80.96
Mean single sequence MFE -23.57
Consensus MFE -15.00
Energy contribution -15.58
Covariance contribution 0.59
Combinations/Pair 1.12
Mean z-score -2.33
Structure conservation index 0.64
SVM decision value 0.82
SVM RNA-class probability 0.858134
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14768509 104 - 27905053
AAUGCGACUUCGCCUGGAAGUUGAAAAACUUUCCAACAG--GCGUGGGCGUGUCAAAAAGAUUCUAAAGUACAAAU----ACACCAAACCAAAAAAAGGAAACAACGGGC
...(((.((.((((((((((((....))))))....)))--))).)).)))(((..............(((....)----))...............(....)....))) ( -22.50)
>DroSec_CAF1 27422 103 - 1
AAUGCGACUUCGCCUGGAAGUUGAAAAACUUUCCACCAG--CGGUGGGCGUGUCAAAAAGAUUCUAAAGUACAAAU----ACAGCAAACCAAA-AAAGGAAAAAACGGGA
..((((((..((((.(((((((....)))))))((((..--.)))))))).)))..............(((....)----)).)))..((...-...))........... ( -25.90)
>DroSim_CAF1 29128 103 - 1
AAUGCGACUUCGCCUGGAAGUUGAAAAACUUUCCACCAG--CGGUGGGCGUGUCAAAAAGAUUCCAAAGUACAAAU----ACACCAAACCAAA-AAAGGAAAAAACGGGA
.....(((..((((.(((((((....)))))))((((..--.)))))))).))).......((((...(((....)----))......((...-...)).......)))) ( -25.80)
>DroEre_CAF1 27651 99 - 1
AAUGCGACUUCGCCUGGAAGUUGCAAAACUUUCCACCAG--GCGUGGGCGUGUCAAAAAGAUUGUAAAGCACAAAA----ACACAAAACCAAA-ACAAAAAAAA----GA
.(((((.((.((((((((((((....)))))....))))--))).)).)))))........((((.....))))..----.............-..........----.. ( -21.40)
>DroYak_CAF1 36536 99 - 1
AAUGCGACUUCGCCUGGAAGUUGAAAAACUUUCCACCAG--GCGUGGGCGUGUCAAAAAGAUUGUAAAGUACGAAU----ACACCAAACCAAA-AAUAAAGGAA----UA
.(((((.((.((((((((((((....)))))....))))--))).)).)))))........(((((...)))))..----.............-..........----.. ( -23.00)
>DroAna_CAF1 30093 107 - 1
AAUGCGACUUCAACAGAAAGUUGCA-AACUUUGCAUCGGUGGCGAGGGCGUGUCAGAAAGAUUGUAGAGAACACACCCCAAUAAAAAGGCGGA-AAAGUAAAAUACAG-A
..(((((((((....).))))))))-..(((((((((..(((((......)))))....)).)))))))......((((........)).)).-..............-. ( -22.80)
>consensus
AAUGCGACUUCGCCUGGAAGUUGAAAAACUUUCCACCAG__GCGUGGGCGUGUCAAAAAGAUUCUAAAGUACAAAU____ACACCAAACCAAA_AAAGGAAAAAACGGGA
.....(((..((((.(((((((....)))))))(((.......))))))).)))........................................................ (-15.00 = -15.58 +   0.59)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:47 2006