Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,763,295 – 14,763,409 |
Length | 114 |
Max. P | 0.643137 |
Location | 14,763,295 – 14,763,409 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 92.54 |
Mean single sequence MFE | -26.52 |
Consensus MFE | -22.58 |
Energy contribution | -22.86 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.04 |
Mean z-score | -1.31 |
Structure conservation index | 0.85 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643137 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14763295 114 - 27905053 CGCCAACCAUUUUCAUUUCGAAUUCGCUGGAAUUCUUGGAUACUCACGUUUAUGCUAGUUGCAUCGCAUGGCAUUUGCUGUUCCAGUUGGGCCAUGUUCUUUUCCCUGCUACAU .((................((((((....))))))..(((...........((((.....)))).(((((((....((((...))))...))))))).....)))..))..... ( -25.10) >DroSec_CAF1 22188 114 - 1 CCCCAACCAUUUCCAUUUCGAAUUCGCUGGAAUUCUUGGAUACUCACGUUUAUGCUAGUUGCAUCGCAAGGCAUUUGCUGUUCCAGUUGGGCCAUGUUCUUUUCCCUGCUACAU .((((((............((((((....)))))).((((....((.((..(((((..((((...)))))))))..)))).))))))))))....................... ( -27.20) >DroSim_CAF1 23383 114 - 1 CCCCAACCAUUUCCAUUUCGAAUUCGCUGGAAUUCUUGGAUACUCACGUUUAUGCUAGUUGCAUCGCAUGGCAUUUGCUGUUCCAGUUGGGCCAUGUUCUUCUCCCUGCUACAU .((((((............((((((....)))))).((((....((.((..((((((..(((...)))))))))..)))).))))))))))....................... ( -27.30) >DroEre_CAF1 22459 107 - 1 CCAUUUC------CAUUUCGAGUUCGCUGGAAUUCUUGGAUACUCACGUUUAUGCUAGUUGCAUCGCAUGGCAUUUGCUGUUCCAGUUGGGCCAUGUUCUU-UCCCUGCUACAU .....((------((....((((((....)))))).))))...........((((.....)))).(((((((....((((...))))...)))))))....-............ ( -25.10) >DroYak_CAF1 22872 113 - 1 CCAUUUCCAUUUCCAUUUCGAGUUCGUUGGAAGUCUUGGAUACUCACGUUUAUGCUGGUUGCAUCGCAUGGCAUUUGCUGUUCCAGUUGGGCCAUGUUCUU-UCCCUGCUACAU .....((((((((((...((....)).))))))...)))).......((....((.((.......(((((((....((((...))))...)))))))....-..)).)).)).. ( -27.92) >consensus CCCCAACCAUUUCCAUUUCGAAUUCGCUGGAAUUCUUGGAUACUCACGUUUAUGCUAGUUGCAUCGCAUGGCAUUUGCUGUUCCAGUUGGGCCAUGUUCUU_UCCCUGCUACAU ...................((((((....))))))..(((...........((((.....)))).(((((((....((((...))))...))))))).....)))......... (-22.58 = -22.86 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:46 2006