| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 2,085,163 – 2,085,275 |
| Length | 112 |
| Max. P | 0.516586 |
| Location | 2,085,163 – 2,085,275 |
|---|---|
| Length | 112 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.71 |
| Mean single sequence MFE | -19.07 |
| Consensus MFE | -3.08 |
| Energy contribution | -4.20 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.16 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.516586 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 2085163 112 - 27905053 CACU---GCAGAGUUAG-AAUACGGCAUAUGCUAUUAUAACUGGCAGCUUAAAUUCAAUUUAAUUAACCCUUCC----AACUGGGAUCAGCUUAGCUAAAAGGCUCAAAAUAAACAGAAU ..((---((..(((((.-(((..(((....)))))).))))).)))).....((((..((((.....(((....----....)))...(((((.......))))).....))))..)))) ( -20.40) >DroSec_CAF1 228020 85 - 1 GACU---GCAGAGUUAG-AA----------------AUAACUGGCAGAUUAAAUUCAAUUUAAUUAACCCUU---------------UAGCUUAGCUAAAGGGCACAAAAGAAACAGAAU ..((---((..(((((.-..----------------.))))).))))....................(((((---------------((((...)))))))))................. ( -24.10) >DroSim_CAF1 230904 85 - 1 CACU---UCAGAGUUAG-AA----------------AUAACUGGCAGGUUAAAUUCAAUUUAAUUAACCCUU---------------UAGCUUAGCUAAAGGGCACAAAAUAAACAGAAU ...(---((..(((((.-..----------------.)))))....((((((((...))))))))..(((((---------------((((...))))))))).............))). ( -18.80) >DroEre_CAF1 229455 103 - 1 CAAUGUGUCAAAGGCUGAAG----------------AUAACUGACGUAUUAAAUUCAAUUUGAUUAAAGUAUGUGUGGUACUGACAUCAGCUUAGCUCAAGGAC-AUAAGUAGACAGAGU ...((((((...((((((..----------------...(((((((((((....((.....))....))))))).)))).(((....))).))))))....)))-)))............ ( -20.60) >DroYak_CAF1 231927 95 - 1 CACU-----AAAGGCAGAAA----------------AUAACUGGCAACUUAAAUUCAAUUUUAUUAAGCCAUACA---UACUGACAUCAGCUUAGCUGAAGGAA-UAAAAUAAACAGAGU .(((-----...(.(((...----------------.....((((....((((......))))....))))....---..))).).(((((...))))).....-............))) ( -11.44) >consensus CACU___GCAGAGUUAG_AA________________AUAACUGGCAGAUUAAAUUCAAUUUAAUUAACCCUU_______ACUG__AUCAGCUUAGCUAAAGGGC_CAAAAUAAACAGAAU ........................................(((...((((((((...)))))))).....................(((((...)))))...............)))... ( -3.08 = -4.20 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:01 2006