Locus 5578

Sequence ID 3R_DroMel_CAF1
Location 14,745,386 – 14,745,479
Length 93
Max. P 0.581869
window9090

overview

Window 0

Location 14,745,386 – 14,745,479
Length 93
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 85.97
Mean single sequence MFE -15.00
Consensus MFE -10.93
Energy contribution -11.10
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.64
Structure conservation index 0.73
SVM decision value 0.10
SVM RNA-class probability 0.581869
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14745386 93 + 27905053
GUAAUUCCAUGCAAAAAAGGAGCAAUUCCAAUCAAAAAAGGAGCAAUUCCAUUA-CAAAAAAGGAGUAAUUCCAUUACAAA---AAAAGGAGUAAUU
...(((((..........((((...))))..........((((..(((((....-.......)))))..))))........---....))))).... ( -15.80)
>DroPse_CAF1 4621 91 + 1
GUAAUUCCAUUGAAAAAAGGAGCAAUUCCAUUGAAAAAAGGAGUAAUUCCA-UUUAAAAAAAGGAGCAAUUCCAUU-CAAA----AAAGGAGCAAUU
....((((.(((((....((((..(((((.((....)).)))))..)))).-..........((((...)))).))-))).----...))))..... ( -17.40)
>DroSim_CAF1 4201 91 + 1
GUAAUUCCAUGCAAAAAAGGAGCAAUUCCAAUCAAAAAAGGAGCAAUUCCA-AA-CAAAAAAGGAGCAAUUCCAUUACAAA----AAAGGAGUAAUU
...(((((..........((((...))))..........((((...((((.-..-.......))))...))))........----...))))).... ( -13.60)
>DroYak_CAF1 3899 89 + 1
GUCAUUCCAUAGAAAAAAGGAGCAAUUCCAAUCAAAAAAGGAGCAAUUCCA-AU--AAAAAAGGAGCAAUUCCAUU-UAAA----AAAAGAGUAAUU
...((((...........((((...))))..........((((...((((.-..--......))))...))))...-....----....)))).... (  -9.50)
>DroAna_CAF1 5803 90 + 1
GCAAUUCCAACUAAAAAAGGAGUAAUUCCAACUAAAAAAGGAGUAAUUCCA-AC-UAAAAAAGGAGCAAUUCCAAC-UAAA----AAAGGAGCAAUU
((...(((..........(((((.(((((..........))))).))))).-..-.......((((...))))...-....----...))))).... ( -17.00)
>DroPer_CAF1 4236 95 + 1
GUAAUUCCAUUGAAAAAAGGAGCAAUUCCAUUGAAAAAAGGAGUAAUUCCA-UUUUAAAAAAGGAGCACUUCCAUU-CAAAAAAAAAAGGAGCAAUU
....((((.((((((...((((..(((((.((....)).)))))..)))).-))))))....((((...))))...-...........))))..... ( -16.70)
>consensus
GUAAUUCCAUGGAAAAAAGGAGCAAUUCCAAUCAAAAAAGGAGCAAUUCCA_AU_CAAAAAAGGAGCAAUUCCAUU_CAAA____AAAGGAGCAAUU
....((((..........((((...((((..........))))...))))............((((...))))...............))))..... (-10.93 = -11.10 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:30 2006