Locus 5577

Sequence ID 3R_DroMel_CAF1
Location 14,744,115 – 14,744,205
Length 90
Max. P 0.581669
window9089

overview

Window 9

Location 14,744,115 – 14,744,205
Length 90
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 86.26
Mean single sequence MFE -24.22
Consensus MFE -19.67
Energy contribution -19.20
Covariance contribution -0.47
Combinations/Pair 1.23
Mean z-score -1.80
Structure conservation index 0.81
SVM decision value 0.10
SVM RNA-class probability 0.581669
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14744115 90 + 27905053
AAAG---ACUUGGCAAUCGUUGUUGUUCAUCGCGGAACAAUAACAGU--GGACAUUUGUCGCUAUCCCAGAAAGUAAUCCUUUAUAUCCGAGCAA
...(---((.((...((.((((((((((......)))))))))).))--...))...)))(((.......((((.....)))).......))).. ( -21.14)
>DroSec_CAF1 2761 92 + 1
AAAG---ACUUGGCAAUCGUUGUUGUUCAUCGCGGAACAACAACAGUGUGGACAUUUGUCGCUAUCCCAGAAAGUAAUCCUUUAGAUCCGAGCAA
...(---.(((((..(((((((((((((......))))))))))......(((....)))........................))))))))).. ( -23.50)
>DroSim_CAF1 2915 92 + 1
AAAG---ACUUGGCAAUCGUUGUUGUUCAUCGCGGAACAACAACAGUGUGGACAUUUGUCGCUAUCCCAGAAAGUAAUCCUUUAGAUCCGAGCAA
...(---.(((((..(((((((((((((......))))))))))......(((....)))........................))))))))).. ( -23.50)
>DroEre_CAF1 2690 90 + 1
AAAG---ACUUGGCAAUAGUUGUUGUUCAUCGCGGAACAACAACAGU--GGACCUUUGUCGCUAUCCCAAGGAGUAAUCCUCCAGAUCCCAGCAA
...(---((..(((.((.((((((((((......)))))))))).))--.).))...)))((((((...((((....))))...)))...))).. ( -28.50)
>DroYak_CAF1 2650 90 + 1
AAAG---ACUUGGCAGUUGUUGUUGUUCAUCGCGGAACAACAACAGU--GGACAUUUGUCGCUAUCCCAAGAAGUAAUCCUCCAGAUCCGAGCAA
....---.(((((((.((((((((((((......)))))))))))))--)(((....)))......)))))........(((.......)))... ( -24.60)
>DroAna_CAF1 4488 88 + 1
AUAGAACAUUUUGCAAUCGUUGUUGUUCUUUGCGGAGCAACAAC--U--GGACAUUUGUCAGUG--CGUAGAAGU-AUCCAUCAGAUCCGAGCAA
..........((((....(((((((((((....)))))))))))--(--(((..((((...(((--(......))-))....)))))))).)))) ( -24.10)
>consensus
AAAG___ACUUGGCAAUCGUUGUUGUUCAUCGCGGAACAACAACAGU__GGACAUUUGUCGCUAUCCCAAAAAGUAAUCCUUCAGAUCCGAGCAA
........(((((.....((((((((((......))))))))))......(((....)))..........((((.....))))....)))))... (-19.67 = -19.20 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:29 2006