Locus 5575

Sequence ID 3R_DroMel_CAF1
Location 14,739,604 – 14,739,699
Length 95
Max. P 0.957471
window9086

overview

Window 6

Location 14,739,604 – 14,739,699
Length 95
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 86.30
Mean single sequence MFE -31.91
Consensus MFE -27.80
Energy contribution -28.36
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -2.48
Structure conservation index 0.87
SVM decision value 1.48
SVM RNA-class probability 0.957471
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14739604 95 + 27905053
-----GGCAACAUGUUGCCAAGAGAUUUUCGCAGUCUCUGGCAACAAGCCAA-CAAUACGAAUCAGCUGGGCCAGACU-AAAACAGCUGUUGCAACGUGUGG
-----(((....((((((((.((((((.....)))))))))))))).)))..-..(((((...((((((.........-....))))))......))))).. ( -33.92)
>DroSec_CAF1 6507 95 + 1
-----GGCAACAUGUUGCCAAGAGAUUUCCUCAGUCUCUGGCAACAAGCCAA-CAAUCCGAAUCAGCUGGGCCAGACU-AAAACAGCUGUUGCAACGUGUGG
-----(((....((((((((.((((((.....)))))))))))))).))).(-((........((((((.........-....))))))........))).. ( -32.51)
>DroSim_CAF1 7095 95 + 1
-----GGCAACAUGUUGCCAAGAGAUUUCCUCAGUCUCUGGCAACAAGCCAA-CAAUCCGAAUCAGCUGGGCCAGACU-UAAACAGCUGUUGCAACGUGUGG
-----(((....((((((((.((((((.....)))))))))))))).))).(-((........((((((.........-....))))))........))).. ( -32.51)
>DroEre_CAF1 6825 95 + 1
-----CGCAACAUGUUGCCAAGAGAUUUUCUCAGUCUCUGGCAACAAGCCAA-CAAUCCGAAUCAGCUGGGCCAGACU-AAAACAGCUGUUGCAACGUGUGG
-----.(((((.((((((((.((((((.....))))))))))))))......-...........(((((.........-....))))))))))......... ( -31.92)
>DroYak_CAF1 6608 95 + 1
-----CGCAGCAUGUUGCCAAGAGAUUUUCUCAGUCGCUGGCAACAAGCCAU-CAAUCCGAAUCAGCUGGGCCAGACU-AAAACAGCUGUUGCAACGUGUGG
-----((((((.((((((((.(.((((.....)))).))))))))).))...-......(...((((((.........-....))))))...)....)))). ( -29.12)
>DroAna_CAF1 7505 96 + 1
AGAUUGGCAACAUGUUGCCAAGAGAUUUCCUCUUACUUUGGCAACCGGCCGAGCAAU------CCGCUGUGCAGGCCACCAACCAGCUGUUGCAAUACGUGG
......((((((.(((((((((((.....)))).....))))))).((((..(((..------......))).))))..........))))))......... ( -31.50)
>consensus
_____GGCAACAUGUUGCCAAGAGAUUUCCUCAGUCUCUGGCAACAAGCCAA_CAAUCCGAAUCAGCUGGGCCAGACU_AAAACAGCUGUUGCAACGUGUGG
......((((((((((((((.((((((.....))))))))))))))...................((((..............))))))))))......... (-27.80 = -28.36 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:27 2006