| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,738,505 – 14,738,597 |
| Length | 92 |
| Max. P | 0.848445 |
| Location | 14,738,505 – 14,738,597 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 69.22 |
| Mean single sequence MFE | -19.02 |
| Consensus MFE | -6.69 |
| Energy contribution | -7.30 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14738505 92 + 27905053 GGAGCAACCAGCAAUUAGCCAUAGUGUAAAAAUCCACUGCAGAAAUUGCAUGUUGACAUAAAUCCAGUUCC----AAAUCCAAAUUAAAUAUAUUU (((((.....((((((..(..(((((........)))))..).))))))(((....))).......)))))----..................... ( -16.80) >DroSec_CAF1 5434 92 + 1 GGAGCAGCCUGCAAUCAGCAAAAGUGCAACAAUCCACUGCAGGAAUUGCAUGCUGACAUAAAUCCAGUGUC----AAAUCCAAAUCAAAUUUACUU (((..(((.((((((..(((....))).....(((......))))))))).)))(((((.......)))))----...)))............... ( -22.10) >DroSim_CAF1 6033 92 + 1 GGAGCAGCCUGCAAUCAGCAAAAGUGCAACAAUCCACUGCAGGAAUUGCAUGCUGACAUAAAUCCAGUGCC----AAAUCCAAAUCAAAUUUACUU (((...(((((...((((((....(((((...(((......))).)))))))))))........))).)).----...)))............... ( -20.10) >DroEre_CAF1 5428 73 + 1 GGAGCAACCUCCAAACAGCAAAAGUGGAACAAUCCAAUGGAGGAAGUGCAUGCUGU-AUAAAUC----------------------AAAUACAGUU ...(((.((((((....((....))(((....)))..))))))...)))..(((((-((.....----------------------..))))))). ( -21.00) >DroYak_CAF1 5421 91 + 1 GGAGCAACAUCCGAUCAGCAAAAGUGGAACAAUCCACCGGAGGAGUCGCAUGCUGA-AUAAAUCCAGUGCC----AGAUCCAAAUUAAAUGUAGUU (((......)))((((.(((...(((((....))))).(((....(((.....)))-.....)))..))).----.))))................ ( -19.10) >DroAna_CAF1 5821 95 + 1 GUGGGCUGCUCCAAUUACCAGAAGCGGUAGCAGGCACGAAAGCAACCCCAUCCUCA-GUAAAUAAAUUAUCCAAGAAAUCCAAUUCAAAUACAAAC ((((((((((((..((.....))..)).)))))((......))...))))).....-.................(((......))).......... ( -15.00) >consensus GGAGCAACCUCCAAUCAGCAAAAGUGGAACAAUCCACUGCAGGAAUUGCAUGCUGA_AUAAAUCCAGUGCC____AAAUCCAAAUCAAAUAUACUU ...(((.((((((..........(((........)))))))))...)))............................................... ( -6.69 = -7.30 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:24 2006