| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,733,770 – 14,733,884 |
| Length | 114 |
| Max. P | 0.514653 |
| Location | 14,733,770 – 14,733,884 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 92.41 |
| Mean single sequence MFE | -49.48 |
| Consensus MFE | -47.47 |
| Energy contribution | -47.75 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.09 |
| Mean z-score | -0.82 |
| Structure conservation index | 0.96 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514653 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14733770 114 + 27905053 UCUGAACUUGGACGGCGGUGGCGGCGGCCUCAACGAAGAUGGCACGCCGUCUCACAUUAGUUCGAGCGCCUCGCCGUUGCCCUCGCCGAUGCGUUCGCCCGCCAAGUCGAUG------GC ..(((.(((((..(((.(.((((((((((((......)).))).))))))).)..........((((((.(((.((.......)).))).)))))))))..))))))))...------.. ( -49.50) >DroPse_CAF1 3509 114 + 1 UCUGAACUUGGACGGCGGUGGCGGCGGCCUCAUUGAUGACGGCACGCCGUCCCACAUUAGCUCGAGCGCCUCGCCGUUGCCCUCGCCGAUGCGCUCGCCCGCAAAGUCGAUG------GC ............((((((.(((((((((((((....))).))).)))))))))......((.(((((((.(((.((.......)).))).)))))))...))...))))...------.. ( -49.30) >DroGri_CAF1 784 114 + 1 UCUGAACUUGGACGGCGGUGGCGGCGGCCUCAUUGAUGACGGCACGCCGUCCCACAUUAGCUCGAGCGCCUCGCCGUUGCCCUCGCCGAUGCGCUCGCCAGCCAAAUCCAUG------GC .......((((..(((((.(((((((((((((....))).))).)))))))))..........((((((.(((.((.......)).))).)))))))))..)))).......------.. ( -51.30) >DroWil_CAF1 784 114 + 1 UCUGAACUUGGACGGCGGUGGCGGCGGCCUCAACGAGGACGGUACGCCGUCUCACAUUAGCUCGAGCGCCUCGCCGUUGCCCUCGCCGAUGCGGUCGCCAGCCAAAUCAAUG------GC ........(((.((((((..(((((((((((...(((.((((....))))))).(....)...))).)))..)))))..))..(((....))))))))))((((......))------)) ( -46.90) >DroAna_CAF1 784 120 + 1 UCUGAACUUGGACGGCGGUGGCGGCGGCCUCAACGAAGACGGCACGCCGUCUCACAUCAGCUCGAGCGCCUCGCCGUUGCCCUCGCCGAUGCGUUCGCCCGCCAAGUCGAUGCAGCAGGC ((((....(.((((((((.((((((((((((......)).))).)))))))...........(((((((.(((.((.......)).))).))))))).)))))..))).).....)))). ( -50.60) >DroPer_CAF1 3540 114 + 1 UCUGAACUUGGACGGCGGUGGCGGCGGCCUCAUUGAUGACGGCACGCCGUCCCACAUUAGCUCGAGCGCCUCGCCGUUGCCCUCGCCGAUGCGCUCGCCCGCAAAGUCGAUG------GC ............((((((.(((((((((((((....))).))).)))))))))......((.(((((((.(((.((.......)).))).)))))))...))...))))...------.. ( -49.30) >consensus UCUGAACUUGGACGGCGGUGGCGGCGGCCUCAACGAUGACGGCACGCCGUCCCACAUUAGCUCGAGCGCCUCGCCGUUGCCCUCGCCGAUGCGCUCGCCCGCCAAGUCGAUG______GC ...((.(((((..(((((.((((((((((((......)).))).)))))))))..........((((((.(((.((.......)).))).)))))))))..)))))))............ (-47.47 = -47.75 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:23 2006