| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,726,523 – 14,726,618 |
| Length | 95 |
| Max. P | 0.935018 |
| Location | 14,726,523 – 14,726,618 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 87.68 |
| Mean single sequence MFE | -26.42 |
| Consensus MFE | -22.83 |
| Energy contribution | -23.03 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.86 |
| SVM decision value | 1.24 |
| SVM RNA-class probability | 0.935018 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14726523 95 + 27905053 GAUGCACCCGCUUCCGAUACGGAAACUACAUCUGAGGCGGAUUCAAAGGCUUAAAUCGUGAA---AAAAAACCAACGCAAUUGCCUGCAAAGGGCACA ..(((..(((((((.(((..(....)...))).))))))).((((..(.......)..))))---...........)))..(((((.....))))).. ( -25.20) >DroSec_CAF1 145071 94 + 1 GAUGCACCUGCUUCCGAUACGGAAACUACAUCUGAGGCGGAUUCAAAGGCUUAAACCAUGAA---AAA-AAGCAACGCAAUUGCCUGCAAAGGGCACA ..(((..(((((((.(((..(....)...))).)))))))........((((..........---...-))))...)))..(((((.....))))).. ( -24.92) >DroSim_CAF1 150938 94 + 1 GAUGCACCUGCUUCUGAUACGGAAACUACAUCUGAGGCGGAUUCAAAGGCUUAAACCGUGAA---AAA-AAGCAACGCAAUUGCCUGCAAAGGGCACA ..(((..(((((((.(((..(....)...))).))))))).((((..((......)).))))---...-.......)))..(((((.....))))).. ( -25.60) >DroEre_CAF1 140256 92 + 1 GAUGCACCCGCUUCCGAUACGGAAACUACAUCCGAGGCGGACUCAAAGGCUUAGGGCGU--A---AAA-AAGCAACGCAAUUGCCAGCGAAGGGCACA ..(((.((((((((((...((((.......))))...))))......(((.....((((--.---...-.....))))....)))))))..))))).. ( -28.50) >DroYak_CAF1 152547 92 + 1 GAUGCACCCGCUUCCGAUACGGAAACCACAUCUGAGGCGGAUUCAAAGGCUUAAGCAGU--A---AAA-AAGCAACGCAAUUGCCUGCGAAGGGCACA ..(((..(((((((.(((..(....)...))).)))))))........((((.......--.---...-))))...)))..(((((.....))))).. ( -27.30) >DroAna_CAF1 147186 97 + 1 GAUGCGCCUGCCUCCGAUACGGAAACCACAUCUGAGGCAGAAUCAAAGGCUUAAAUAAGAAACGAAAA-UACAAACGCAAUUGCCUGCAAGAGGCACA ..((((.(((((((.(((..(....)...))).))))))).......(.(((....)))...).....-......))))..(((((.....))))).. ( -27.00) >consensus GAUGCACCCGCUUCCGAUACGGAAACUACAUCUGAGGCGGAUUCAAAGGCUUAAACCGUGAA___AAA_AAGCAACGCAAUUGCCUGCAAAGGGCACA ..(((..(((((((.(((..(....)...))).)))))))........((((.................))))...)))..(((((.....))))).. (-22.83 = -23.03 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:16 2006