Locus 5565

Sequence ID 3R_DroMel_CAF1
Location 14,717,328 – 14,717,446
Length 118
Max. P 0.750898
window9072

overview

Window 2

Location 14,717,328 – 14,717,446
Length 118
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.69
Mean single sequence MFE -25.37
Consensus MFE -19.52
Energy contribution -19.97
Covariance contribution 0.45
Combinations/Pair 1.13
Mean z-score -2.12
Structure conservation index 0.77
SVM decision value 0.47
SVM RNA-class probability 0.750898
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14717328 118 - 27905053
UUUGCGUCAUUCGGCGUUCGAAAUUGCUGCGCUUCAAGUGUAAUAUCACUUAAGCUCUUAAGCAGUCAACACCAAGCAGUAGAAGAUGGGGCAAAAAAAAAAAAUAAAUAAGAAC--AGC
(((((.(((((((.....)))).(((((((((((.(((((......))))))))).........(....).....)))))))....))).)))))....................--... ( -26.50)
>DroSec_CAF1 135903 103 - 1
UCUGCGUCAUUCGGCGGGCGAAAUUGCUGCGCUUCAAGUGUAAUAUCACUUAAGCUCUUAAGCAGUCAACACCAAGCAGAGGA-------------AA--AAAAUAAAUAAAAAC--AGC
((((((((....)))((.....((((((..((((.(((((......))))))))).....)))))).....))..)))))...-------------..--...............--... ( -26.30)
>DroSim_CAF1 141234 105 - 1
UCUGCGUCAUUCGGCGGGCGAAAUUGCUGCGCUUCAAGUGUAAUAUCACUUAAGCUCUUAAGCAGUCAACACCAAGCAGAGGA-------------AAAAAAAAUAAAUAAAAAC--AGC
((((((((....)))((.....((((((..((((.(((((......))))))))).....)))))).....))..)))))...-------------...................--... ( -26.30)
>DroEre_CAF1 131252 108 - 1
UCUGCGUCAUUCGGCUGGCGAAAUUGCUGCGCUUCAAGUGUAAUAUCACUUAAGCUCUUAAGCAGUCAACACCAAGCGGAAGAAGAUG---------AAAAAA-UAAAUAAAAAC--AGG
....((((.(((.(((((.(..((((((..((((.(((((......))))))))).....))))))...).)).))).)))...))))---------......-...........--... ( -27.00)
>DroYak_CAF1 142366 109 - 1
UCUGCGUCAUUCGACGGACGAAAUUGCUGCGCUUCAAGUGUAAUAUCACUUAAGCUCUUAAGCAGUCAACACCAAGCAGAAGAAGAUG---------AAAAAAGUAAAUAAAAAC--AGC
((((((((....)))((.....((((((..((((.(((((......))))))))).....)))))).....))..)))))........---------..................--... ( -25.80)
>DroAna_CAF1 136474 109 - 1
ACUUCGUCAUUUGGCGAAUGAAAUUGCUGCGCUUCAAGUGUAAUAUCACUUAAGCUCUUAAGCAGUCAACAUGAAACUGGUAA-----------AAAAAAAAAGCACCCAAGAACCCAAA
..((((((....))))))......((((..((((.(((((......))))))))).......((((.........))))....-----------........)))).............. ( -20.30)
>consensus
UCUGCGUCAUUCGGCGGGCGAAAUUGCUGCGCUUCAAGUGUAAUAUCACUUAAGCUCUUAAGCAGUCAACACCAAGCAGAAGA_____________AAAAAAAAUAAAUAAAAAC__AGC
((((((((....))).......((((((..((((.(((((......))))))))).....)))))).........)))))........................................ (-19.52 = -19.97 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:13 2006