Locus 5563

Sequence ID 3R_DroMel_CAF1
Location 14,708,164 – 14,708,255
Length 91
Max. P 0.536337
window9067

overview

Window 7

Location 14,708,164 – 14,708,255
Length 91
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 77.17
Mean single sequence MFE -25.65
Consensus MFE -13.43
Energy contribution -13.68
Covariance contribution 0.25
Combinations/Pair 1.16
Mean z-score -1.72
Structure conservation index 0.52
SVM decision value 0.01
SVM RNA-class probability 0.536337
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14708164 91 + 27905053
UUUCCAGCACGUUUGCUCAAUGAGCAAACAACAAAUAGGGGAUUGGGGAUUCGGAUUCG------GAUUUGGCUUCAGAUUGAAAAUUGGUAUGGGA--------------
.(((((((..((((((((...))))))))..(((((...(((((.(.....).))))).------.)))))))(((.....)))........)))))-------------- ( -22.70)
>DroSec_CAF1 126867 94 + 1
UUUCCAGCACGUUUGCUCAAUGAGCAAAC---AAAUAGGGGAUUGGGGAUUCGGAUUCGGAUACGGAUUCGGCUUCAGAUUGAAAAUGGGUAUGGGA--------------
.(((((..((((((((((...))))))))---..........((((((...((((((((....)))))))).))))))...........)).)))))-------------- ( -29.50)
>DroSim_CAF1 131277 94 + 1
UUGCCAGCACGUUUGCUCAAUGAGCAAAC---AAAUAGGGGAUUGGGGAUUCGGAUUCGAAUACGGAUACGCCUUCAGAUUGAAAAUGGGCAUGGGA--------------
.((((.....((((((((...))))))))---....(((.((((.(..(((((....))))).).))).).)))..............)))).....-------------- ( -26.60)
>DroEre_CAF1 122165 96 + 1
UUUCCAGCACGUUUGCUCAAUGAGCAAAC---AAAUAGGGGAUUGGGGAUUCGGAUUCG------------GGUGCGGAUUGAAAACGGGAGUGGGAGUGGGAAUGGGAAA
((((((((((((((((((...))))))))---.......(((((.(.....).))))).------------.)))).........((....))...........)))))). ( -26.70)
>DroYak_CAF1 128070 94 + 1
UUUCCAGCACGUUUGCUCAAUGAGCAAAC---AAAUAGGGGAUUGGGGAUCCGGAUUCGAAUUCGGAAUCGGGUACGGAUUAAAAAUUAGAAUGGGA--------------
.(((((....((((((((...))))))))---........((((...((((((.((((((........)))))).))))))...))))....)))))-------------- ( -29.20)
>DroAna_CAF1 127983 93 + 1
UUUCGGGCACGUUUGUUCAAUGAGCAAAC---AAAUAGGGGAUUGGGAA-UCGGACUUGGAUUCAGAUACGGAAUGGGAUUGGUAUUGGGAUUGGCA--------------
...((((..(((((((((...))))))))---........(((.....)-)))..))))(((((.(((((.((......)).))))).)))))....-------------- ( -19.20)
>consensus
UUUCCAGCACGUUUGCUCAAUGAGCAAAC___AAAUAGGGGAUUGGGGAUUCGGAUUCG_AU_CGGAUUCGGCUUCAGAUUGAAAAUGGGAAUGGGA______________
.(((((....((((((((...))))))))..........(((((.(.....).)))))..................................))))).............. (-13.43 = -13.68 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:09 2006