Locus 5562

Sequence ID 3R_DroMel_CAF1
Location 14,706,836 – 14,706,943
Length 107
Max. P 0.650453
window9066

overview

Window 6

Location 14,706,836 – 14,706,943
Length 107
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 78.87
Mean single sequence MFE -28.58
Consensus MFE -16.16
Energy contribution -18.00
Covariance contribution 1.84
Combinations/Pair 1.07
Mean z-score -1.85
Structure conservation index 0.57
SVM decision value 0.24
SVM RNA-class probability 0.650453
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14706836 107 + 27905053
CUAAGCGUGUGUGAGU------AUAUCCUGACUGGCUGUGCGUGUGAGUUAGUGUCAAGUCAGGGACAUUUAGUAAUUCCGCAGGCAUAUCAAGGACAACGUACUCAUAAAUA
.........(((((((------((.((((...(((.(((((.((((((((((((((........)))))....))))).)))).))))))))))))....))))))))).... ( -31.50)
>DroPse_CAF1 116260 89 + 1
---------UUUGCAUGU-------------CU--GUGUGCGUGUGAGUUAGUGUCAAGUGAGAGACAUUUAGUAAUUCCGCAGGCAUAUCAAGGACAACGUACUCAUAAAUA
---------..(((.(((-------------((--((((((.((((((((((((((........)))))....))))).)))).))))))...)))))..))).......... ( -23.80)
>DroYak_CAF1 126754 111 + 1
--GAGUGUGUGUGGGUGUGUGAGCAUCCUGACUGGCUGUGCGUGUGAGUUAGUGUCAAGUCAGGGACAUUUAGUAAUUCCGCAGGCAUAUCAAGGACAACGUACUCAUAAAUA
--((((((((((((((((....))))))...((.(.(((((.((((((((((((((........)))))....))))).)))).))))).).)).)).))))))))....... ( -34.10)
>DroMoj_CAF1 135583 97 + 1
------GUGUAUGAGU------GUCGUC----CGUAUGAUCGUGUGAGUUAGUGUCAACUCAGGGACAUUUAGUAAUUCCGCACGCAUAUCAAGGACAACGUACUCAUAAAUA
------...(((((((------((.(((----(...((((((((((((((((((((........)))))....))))).))))))...)))).)))).))..))))))).... ( -29.70)
>DroPer_CAF1 118723 89 + 1
---------UUUGCAUGU-------------CU--GUGUGCGUGUGAGUUAGUGUCAAGUGAGAGACAUUUAGUAAUUCCGCAGGCAUAUCAAGGACAACGUACUCAUAAAUA
---------..(((.(((-------------((--((((((.((((((((((((((........)))))....))))).)))).))))))...)))))..))).......... ( -23.80)
>consensus
______GUGUGUGAGUGU_________C___CUG_CUGUGCGUGUGAGUUAGUGUCAAGUCAGGGACAUUUAGUAAUUCCGCAGGCAUAUCAAGGACAACGUACUCAUAAAUA
.........((((((((...................(((((.((((((((((((((........)))))....))))).)))).)))))....(.....).)))))))).... (-16.16 = -18.00 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:08 2006