Locus 5561

Sequence ID 3R_DroMel_CAF1
Location 14,705,377 – 14,705,470
Length 93
Max. P 0.818475
window9065

overview

Window 5

Location 14,705,377 – 14,705,470
Length 93
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 77.62
Mean single sequence MFE -22.37
Consensus MFE -11.69
Energy contribution -11.88
Covariance contribution 0.19
Combinations/Pair 1.15
Mean z-score -2.07
Structure conservation index 0.52
SVM decision value 0.67
SVM RNA-class probability 0.818475
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14705377 93 - 27905053
---------CGAAUGCCACCUGGAGAAACUCGUCUCCAGAUUGUGCAUGAAAUCAAGCAGAAUGAGAAACCAAUUUGUGUGGAAAACACAA--AGGCAACAACA
---------....((((..(((((((......)))))))(((.(((.((....)).))).)))..........(((((((.....))))))--)))))...... ( -29.80)
>DroVir_CAF1 143890 98 - 1
GUGCGUGCUUCUGUGGCACCUGGCAGAUCUGUACUUCAGUUUUUGCAUGAAAUCAAGCAGAAUGAGAAACCAAUUUGUGUG-AAAACACAA--AGGCAACA---
.(((((((.(((((.(....).)))))...))))((((..((((((.((....)).)))))))))).......(((((((.-...))))))--).)))...--- ( -27.80)
>DroPse_CAF1 115278 92 - 1
----------GCAGGGCAACUGAAGGAACUCGUCUCUAGAUUGUGUAUGAAAUCAGGCAGAAUGAGAAACCAAUUUGUGUGGAAAAUACAA--AGGCAACAGCA
----------((.((....))...((..(((((((((.((((........)))).)).)).)))))...))..(((((((.....))))))--)(....).)). ( -20.30)
>DroGri_CAF1 119038 78 - 1
-------------------UUGCAAAAACUGUACUUCAGCUUGUGCAUGAAAUCAAGCAGAAUGAGAAACCAAUUUGUGUG-AAAAUACAA--AGGCAAC----
-------------------((((.....((((..((((((....)).)))).....)))).............(((((((.-...))))))--).)))).---- ( -16.60)
>DroAna_CAF1 125374 95 - 1
---------UAUGUGGCACCUGAAGCACCUCGUCUCCAGAUUGUGCAUGUAAUCAACCAGAAUGAGAAACCAAUUUGUGUGGAAAACACAAAAAGGCAACAGCA
---------..(((.((..(((..((((...(((....))).)))).((....))..))).............(((((((.....)))))))...)).)))... ( -18.20)
>DroPer_CAF1 117735 92 - 1
----------GCAGGGCAACUGAAGGAACUCGUCUCCAGAUUGUGUAUGAAAUCAGGCAGAAUGAGAAACCAAUUUGUGUGGAAAAUACAA--AGGCAACAGCA
----------((.((....))...((..(((((((((.((((........)))).)).)).)))))...))..(((((((.....))))))--)(....).)). ( -21.50)
>consensus
__________GCAUGGCACCUGAAGGAACUCGUCUCCAGAUUGUGCAUGAAAUCAAGCAGAAUGAGAAACCAAUUUGUGUGGAAAACACAA__AGGCAACAGCA
................................((((...(((.(((.((....)).))).)))))))..((...((((((.....))))))...))........ (-11.69 = -11.88 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:07 2006