Locus 556

Sequence ID 3R_DroMel_CAF1
Location 2,076,979 – 2,077,079
Length 100
Max. P 0.916990
window886

overview

Window 6

Location 2,076,979 – 2,077,079
Length 100
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 74.69
Mean single sequence MFE -23.67
Consensus MFE -12.06
Energy contribution -12.92
Covariance contribution 0.86
Combinations/Pair 1.18
Mean z-score -2.06
Structure conservation index 0.51
SVM decision value 1.11
SVM RNA-class probability 0.916990
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2076979 100 + 27905053
GGGCUCACCUG-CUCUGUGGACCUAAACAGAUUUUUAAUUAUCAA-CUUAAAAAUGCCUCGUUUAUGACAUUCGGAGAGCCCCCUAGCCAGCGGCUGAAAG--U
((((((.((.(-((((((........)))))(((((((.......-.))))))).))...(((...)))....)).))))))..(((((...)))))....--. ( -25.40)
>DroPse_CAF1 196597 97 + 1
GGGCUUUCCUA-CAUUGUGGCCUUAAACAUAUUUUUAAU---CCG-CUUAAAAAUACUCUGUUUAAAACAUUUGGAAAGCUCUCUAGCCGCAGGCCGCAAG--C
(((((((((..-...(((....((((((((((((((((.---...-.)))))))))...))))))).)))...)))))))))....(((...)))(....)--. ( -25.20)
>DroSec_CAF1 220119 100 + 1
GGGCUCACCUG-CUCUGUGGACCUAAACAGAUUUUUAAUUAUCAA-CUUAAAAAUGCCUCGUUUAUGACAUUUGGCGAGCCCUCUAGCCAGCGGCUAUAAG--U
((((((.((..-.(((((........)))))..............-.....(((((.(........).))))))).))))))..(((((...)))))....--. ( -26.90)
>DroWil_CAF1 223904 98 + 1
CCACUCGCCUAGCAAUAU-GCUUUAAACAUAUUUUUAAUACACAUUUUUAAAAAUAUUUUGUUUAAAACAUUUUGAAAGCUCGCU-----CAAGCCACAAGACU
......((....(((.((-(.(((((((((((((((((.........)))))))))...)))))))).))).)))...))..((.-----...))......... ( -15.40)
>DroYak_CAF1 224387 100 + 1
GGGCUCACCUG-CUCUGUACACCUAAACAGAUUUUUAAUUAUCAA-CUUAAAAAUGCCUCGUUUAUGACAUUUGGAGGGCCCUCUAGCCAGCGGCUGCAAG--U
((((((.((..-.(((((........)))))..............-.....(((((.(........).))))))).))))))..(((((...)))))....--. ( -23.90)
>DroPer_CAF1 199236 97 + 1
GGGCUUUCCUA-CAUUGUGGCCUUAAACAUAUUUUUAAU---CCG-CUUAAAAAUACUCUGUUUAAAACAUUUGGAAAGCUCUCUAGCCGCAGGCCGCAAG--C
(((((((((..-...(((....((((((((((((((((.---...-.)))))))))...))))))).)))...)))))))))....(((...)))(....)--. ( -25.20)
>consensus
GGGCUCACCUA_CACUGUGGACCUAAACAGAUUUUUAAUUAUCAA_CUUAAAAAUACCUCGUUUAAAACAUUUGGAAAGCCCUCUAGCCACAGGCCGCAAG__U
((((((.((.....((((........))))((((((((.........))))))))..................)).))))))....((.....))......... (-12.06 = -12.92 +   0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:00 2006