| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,698,771 – 14,698,870 |
| Length | 99 |
| Max. P | 0.983062 |
| Location | 14,698,771 – 14,698,870 |
|---|---|
| Length | 99 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 83.08 |
| Mean single sequence MFE | -26.08 |
| Consensus MFE | -20.56 |
| Energy contribution | -21.25 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.79 |
| SVM decision value | 1.93 |
| SVM RNA-class probability | 0.983062 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14698771 99 - 27905053 CGAUUUUUAUAUUACUCAUUUUGGG-AAACUCAUUAAACGGUUUGUAACAAAUGGUUUGUUGCACAGUGCUAUUGAUUUCAGUGGCACGAGUAGCAAUUU ...........((((((.....((.-...))............((((((((.....))))))))..(((((((((....)))))))))))))))...... ( -27.50) >DroSec_CAF1 117644 98 - 1 UGAUUUUUAUAUUACUCAUUUUGAG-GG-GUCAUUAAACAGUUUGUAACAAAUGGUUUGUUGCACAGUGCUAUUGAUUUCAGUGGCACGAGUAGCAAUUU ...........((((((........-..-..............((((((((.....))))))))..(((((((((....)))))))))))))))...... ( -26.20) >DroSim_CAF1 122078 99 - 1 CGAUUUUUACAUCACUCAUUUUGGG-GAACUCAUUAAACGGCUUGUAACAAAUGGCUUGUUGCACAGUGCUAUUGAUUUCAGUGGCACGAGUAGCAAUUU ...........((.(((.....)))-))((((...........((((((((.....))))))))..(((((((((....)))))))))))))........ ( -27.00) >DroEre_CAF1 112998 95 - 1 -GGUAUUU--AUCUCUAAACUUAUGGAAACUUUAAAAAUGGUU--AAAAGAAUGGUUUGUUGCGCAGUGCUAUUGAUUUCAGUGGCACGAGUAGCAAUUU -..(((((--...((((......))))((((........))))--....)))))..(((((((...(((((((((....)))))))))..)))))))... ( -23.60) >consensus CGAUUUUUAUAUCACUCAUUUUGGG_AAACUCAUUAAACGGUUUGUAACAAAUGGUUUGUUGCACAGUGCUAUUGAUUUCAGUGGCACGAGUAGCAAUUU ......(((((..........((((....))))..........)))))........(((((((...(((((((((....)))))))))..)))))))... (-20.56 = -21.25 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:04 2006