Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 14,697,390 – 14,697,497 |
Length | 107 |
Max. P | 0.918794 |
Location | 14,697,390 – 14,697,497 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 93.44 |
Mean single sequence MFE | -38.22 |
Consensus MFE | -35.68 |
Energy contribution | -35.40 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -1.36 |
Structure conservation index | 0.93 |
SVM decision value | 1.12 |
SVM RNA-class probability | 0.918794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14697390 107 - 27905053 CUACGUGUCUGCCAUUUGUCUGCGCUUAUUUUGGCCAGCUCAUCCCAGAGCUGCGGAUUCGGACUCGGCGGCUUGAGAGCAGCAG-------CCGGCUGCCAAAUGCCAAAUGA ...((.(((((......(((((((((......))).(((((......))))))))))).))))).))..(((....(.(((((..-------...))))))....)))...... ( -37.70) >DroSec_CAF1 116232 107 - 1 CUACGUGUCUGCCAUUUGUCUGCGCUUAUUUUGGCCAGCUCAUCCCGGAGCUGCGGAUUCGGACUCGUCGGCUUGAGAGCAGCAG-------CCAGCUGCCAAAUGCCAAAUGA ..(((.(((((......(((((((((......))).(((((......))))))))))).))))).))).(((....(.(((((..-------...))))))....)))...... ( -37.90) >DroSim_CAF1 120613 107 - 1 CUACGUGUCUGCCAUUUGUCUGCGCUUAUUUUGGCCAGCUCAUCCCGGAGCUGCGGAUUCGGACUCGGCGGCUUGAGAGCAGCAG-------CCAGCUGCCAAAUGCCAAAUGA ...((.(((((......(((((((((......))).(((((......))))))))))).))))).))..(((....(.(((((..-------...))))))....)))...... ( -37.70) >DroEre_CAF1 111666 113 - 1 CUACGUGUCUGCCAUUUGUCUGCGCUUAUUUUGGCCAGCUCAUCCCAGAGCUGCGGACUCGGACA-GGCGGCUUCAAAGCAGCAGCCAGCAGCCAGCUGCCAAAUGCCAAAUGA ...((((((((((....(((((((((......))).(((((......)))))))))))..)).))-)))(((......(((((.((.....))..))))).....)))..))). ( -42.00) >DroYak_CAF1 117368 107 - 1 CUACGUGUCUGCCAUUUGUCUGCGCUUAUUUUGGCCAGUUCAUCCCAGAGCUGCAGAUUCGGACUCGGCGGCUUGAAAGCAGCAG-------CCAGCUGCCAAAUGCCAAAUGA ...((.(((((......(((((((((......))).(((((......))))))))))).))))).))..(((......(((((..-------...))))).....)))...... ( -35.80) >consensus CUACGUGUCUGCCAUUUGUCUGCGCUUAUUUUGGCCAGCUCAUCCCAGAGCUGCGGAUUCGGACUCGGCGGCUUGAGAGCAGCAG_______CCAGCUGCCAAAUGCCAAAUGA ...((.(((((......(((((((((......))).(((((......))))))))))).))))).))..(((......(((((............))))).....)))...... (-35.68 = -35.40 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:58:02 2006