Locus 5553

Sequence ID 3R_DroMel_CAF1
Location 14,679,777 – 14,679,868
Length 91
Max. P 0.617305
window9053

overview

Window 3

Location 14,679,777 – 14,679,868
Length 91
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 81.08
Mean single sequence MFE -25.72
Consensus MFE -13.20
Energy contribution -14.24
Covariance contribution 1.04
Combinations/Pair 1.24
Mean z-score -2.07
Structure conservation index 0.51
SVM decision value 0.17
SVM RNA-class probability 0.617305
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14679777 91 + 27905053
UUUCC-CCAGUCCCCGCGUGACUGGUA--CUGGUAUUCAUAUUUCCAUGGCCAGUGACCCAGUCCUCCUGGUCAACUGAGUAUUU---ACAAAGGAG
..(((-.((((..(((.(.((((((((--(((((...(((......))))))))))..))))))..).)))...)))).((....---))...))). ( -25.20)
>DroSec_CAF1 95126 94 + 1
UUUCCCCCAGUCCCCGCGUGACUGGUACACUGGUAUUCAUAUUUCCAUGGCCAGUGACCCAGUCCUCCUGGUCAACUGAGUAUUU---ACAAAGGGG
...((((((((..(((.(.((((((..(((((((...(((......))))))))))..))))))..).)))...)))).((....---))...)))) ( -32.60)
>DroSim_CAF1 102103 94 + 1
UUUCCCCCAGUCCCCGCGUGACUGGUACACUGGUAUUCAUAUUUCCAUGGCCAGUGACCCAGUCCUCCUGGUCAACUGAGUAUUU---ACAAAGGGG
...((((((((..(((.(.((((((..(((((((...(((......))))))))))..))))))..).)))...)))).((....---))...)))) ( -32.60)
>DroYak_CAF1 91372 84 + 1
UUUCC-CCAGUCCCCGC-UG--------ACUGGUAUUCAUAUUUCCAUGGCCAGUGACUCAGUCCUCCUGGCCAACUGAGUAUUC---ACAAAGGAG
..(((-((((((.....-.)--------))))).....((((((...(((((((.((........)))))))))...))))))..---.....))). ( -26.00)
>DroAna_CAF1 91461 79 + 1
UUACC-UUCGUC------UG--GGGU------AUAUUCAUAUUUCCAUGGCCAGUGACCCAUU---CCUGGACAACUAAGUAUUUUACGCAAAAAAG
.....-...(((------..--(((.------....((((....(....)...)))).....)---))..)))........................ ( -12.20)
>consensus
UUUCC_CCAGUCCCCGCGUGACUGGUA_ACUGGUAUUCAUAUUUCCAUGGCCAGUGACCCAGUCCUCCUGGUCAACUGAGUAUUU___ACAAAGGAG
......((((((.......)))))).............((((((...(((((((.((........)))))))))...)))))).............. (-13.20 = -14.24 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:55 2006