| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,673,179 – 14,673,276 |
| Length | 97 |
| Max. P | 0.848080 |
| Location | 14,673,179 – 14,673,276 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 82.38 |
| Mean single sequence MFE | -31.92 |
| Consensus MFE | -17.38 |
| Energy contribution | -18.26 |
| Covariance contribution | 0.88 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.50 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.848080 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14673179 97 + 27905053 UUUCAAUUCCACAACCCG--UCUGAAUUUUCAUUGUUCGAUUGUCGGUGGGGCAACGUCAAUUGCCGUCAAUUGGCGUCAAUUUCGCAUGG---GAUGUGGA----- .......((((((.((((--(.((((.......(((((.((.....)).)))))((((((((((....))))))))))....)))).))))---).))))))----- ( -33.80) >DroSec_CAF1 88520 99 + 1 UUUCAAUUCCACAACCCGUGUCUGAAUUUUCAUUGUUCGAUUGUCGGUGGGGCAACGUCAAUUGCCGUCAAUUGGCGUCAAUUUCGCAUGG---GAUGUGGA----- .......((((((.(((((((..(((((.....(((((.((.....)).)))))((((((((((....)))))))))).))))).))))))---).))))))----- ( -35.50) >DroSim_CAF1 95563 99 + 1 UUUCAAUUCCACAACCCGUGUCUGAAUUUUCAUUGUUCGAUUGUCGGUGGGGCAACGUCAAUUGCCGUCAAUUGGCGUCAAUUUCGCAUGG---GAUGUGGA----- .......((((((.(((((((..(((((.....(((((.((.....)).)))))((((((((((....)))))))))).))))).))))))---).))))))----- ( -35.50) >DroEre_CAF1 87149 97 + 1 UUUCAAUUCCACAACCCG--UCUGAAAUUUCAUUGUUCGAUUGUCGUUGGGGCAACGGCAAUUGCCGUCAAUUGGCGUCAAUUUCGCAUUG---GAUGUGGA----- .......((((((.((.(--(.(((((((.........(((((((((((...)))))))))))((((.....))))...))))))).)).)---).))))))----- ( -32.60) >DroAna_CAF1 84220 91 + 1 --GGAAUUUCUCAAC--------------CCAUUGUUCGAUAGUCAGUGGUGCGACGUCAAUUGCCUUCAAUUGGCUCUAAUUUCACUUGGACGGAUAUGGACGGAG --.......(((...--------------((((.(((((....(((((((...((.((((((((....)))))))))).....)))).))).)))))))))...))) ( -22.20) >consensus UUUCAAUUCCACAACCCG__UCUGAAUUUUCAUUGUUCGAUUGUCGGUGGGGCAACGUCAAUUGCCGUCAAUUGGCGUCAAUUUCGCAUGG___GAUGUGGA_____ .......((((((...................((((((.((.....)).))))))(((((((((....)))))))))...................))))))..... (-17.38 = -18.26 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:54 2006