Locus 5551

Sequence ID 3R_DroMel_CAF1
Location 14,672,607 – 14,672,699
Length 92
Max. P 0.721724
window9051

overview

Window 1

Location 14,672,607 – 14,672,699
Length 92
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 74.62
Mean single sequence MFE -24.84
Consensus MFE -9.22
Energy contribution -12.02
Covariance contribution 2.79
Combinations/Pair 1.15
Mean z-score -2.18
Structure conservation index 0.37
SVM decision value 0.40
SVM RNA-class probability 0.721724
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14672607 92 - 27905053
CCAU--CGCUGCCGAGUACUUACAUUUGCGAACAAUAAAGCGGU-----------GAAUGGCUAAAAUGCUGGC-AAAAGCUCGGCUAGCAACAUGCAAAGCGCA-A
....--.((((((((((.....((((..(.............).-----------.))))((((......))))-....))))))).)))....(((.....)))-. ( -27.72)
>DroSec_CAF1 87961 93 - 1
CCAU--CGCUGCCGAGUACUUAUAUUUGCGAACAAUAAAGCGGU-----------GAAUGGCUAAAAUGCUGGCCAAAAGCUCGGCUAGCAACAUGCAAAGCGCA-A
....--.((((((((((........((((..........)))).-----------...((((((......))))))...))))))).)))....(((.....)))-. ( -28.70)
>DroSim_CAF1 94992 93 - 1
CCAU--CGCUGCCGAGUACUUAUAUUUGCGAACAAUAAAGCGGU-----------GAAUGGCUAAAAUGCUGGCCAAAAGCUCGGCUAGCAACAUGCAAAGCGCA-A
....--.((((((((((........((((..........)))).-----------...((((((......))))))...))))))).)))....(((.....)))-. ( -28.70)
>DroEre_CAF1 86602 91 - 1
CCAU--CGCUGCCGAGUACUCAUAUUUG-GAAAAAUAAAGCGGU-----------GAAUGGCUAAAAUGCUCGC-AAAAGCUCGGCUAGCAACAUGCAAAGCGCA-A
....--.((((((((((.....(((((.-...)))))..(((..-----------....(((......))))))-....))))))).)))....(((.....)))-. ( -26.80)
>DroAna_CAF1 83776 82 - 1
CCAGCCCGCUG-AGAGCUCUCAUAUUUGCGAGGAAUAAAGCGUU-----------GAAUUGCCAUAAUGCUAG------------AUAGCAACAUGCAAAACGCA-A
....(((((((-((....)))).....))).))......(((((-----------...((((.((..((((..------------..))))..))))))))))).-. ( -20.60)
>DroPer_CAF1 87524 93 - 1
------------UGAACACUUGUAUUUGCAAACAAUAAAGCGUAGGGGGAUAAACGCAUAGCUCAAAUGU-AGC-UGAACGGCGGAUAGAAAUAUGCAAAGCACAGA
------------.......((((.((((((.........((((..........)))).((((((....).-)))-)).................))))))..)))). ( -16.50)
>consensus
CCAU__CGCUGCCGAGUACUUAUAUUUGCGAACAAUAAAGCGGU___________GAAUGGCUAAAAUGCUGGC_AAAAGCUCGGCUAGCAACAUGCAAAGCGCA_A
.......((((((((((.........(((..........)))................((((......)))).......))))))).)))....(((.....))).. ( -9.22 = -12.02 +   2.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:53 2006