Locus 555

Sequence ID 3R_DroMel_CAF1
Location 2,074,669 – 2,074,763
Length 94
Max. P 0.806679
window885

overview

Window 5

Location 2,074,669 – 2,074,763
Length 94
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 77.82
Mean single sequence MFE -28.35
Consensus MFE -17.00
Energy contribution -17.42
Covariance contribution 0.42
Combinations/Pair 1.24
Mean z-score -1.77
Structure conservation index 0.60
SVM decision value 0.63
SVM RNA-class probability 0.806679
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 2074669 94 - 27905053
GCU----GCUGCCGUAUAGCUGCUCAGACGGUUAAGGAUUGAAUGAUACAAUUUUCCACCGC-ACACGACAAUUUAUAUACGGCGGCAGUGGCAGUGAC
(((----(((((((((((.((....)).((((..(((((((.......)))))))..)))).-.............))))))))))))))......... ( -32.00)
>DroGri_CAF1 223454 87 - 1
GCUGUUGGCUGCUGUGUGGCUGCUCUGACGGGUUAGGAUGAAAUGAUACAAUUUCCCAAUGGCCCAGCACAAUUUAUAUAG-GCGGCA-----------
.......((((((((((((.((((.....((((((....(((((......)))))....))))))))))....))))))).-))))).----------- ( -25.00)
>DroEre_CAF1 219132 94 - 1
GCU----GCUGCCGUAUAGCUGCUCAGACGGUUAAGGAUUGAAUGAUACAAUUUUCCACCGC-ACACGACAAUUUAUAUACGGCGGCAGUGGCAGUGAC
(((----(((((((((((.((....)).((((..(((((((.......)))))))..)))).-.............))))))))))))))......... ( -32.00)
>DroWil_CAF1 221178 88 - 1
GCU---GGCUGGCGUGUUGCUGCUUUGACGGGUAAGGAUGAAAUGAUACAAUUUUCCAAUGC-ACACGACAAUUUAUAUACGUCGG--GUGGCA-----
(((---(.(((((((((.......(((.((.(((.(((..((((......)))))))..)))-...)).))).....)))))))))--.)))).----- ( -23.90)
>DroYak_CAF1 222063 94 - 1
GCU----GCUGCCGUAUAGCUGCUCAGACGGUUAAGGAUUGAAUGAUACAAUUUUCCACCGC-ACACGACAAUUUAUAUACGGCAGCAGUGGCAGUGAC
(((----(((((((((((.((....)).((((..(((((((.......)))))))..)))).-.............))))))))))))))......... ( -32.70)
>DroMoj_CAF1 226490 83 - 1
GCU---GGCUGCUGUGUUGCUGCUUUGACGGGUUAGGAUGAAAUGAUACAAUUUCCCAAUGC-CAAGCACAACUUAUAUAG-GCAGCG-----------
(((---(.(((....((((.(((((.....(((..((..(((((......)))))))...))-)))))))))).....)))-.)))).----------- ( -24.50)
>consensus
GCU____GCUGCCGUAUAGCUGCUCAGACGGGUAAGGAUGAAAUGAUACAAUUUUCCAACGC_ACACGACAAUUUAUAUACGGCGGCAGUGGCA_____
.......(((((((((((.(((......)))....(((..((((......)))))))...................)))))))))))............ (-17.00 = -17.42 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:45:59 2006