Locus 5549

Sequence ID 3R_DroMel_CAF1
Location 14,660,566 – 14,660,660
Length 94
Max. P 0.567639
window9046

overview

Window 6

Location 14,660,566 – 14,660,660
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 86.04
Mean single sequence MFE -25.30
Consensus MFE -18.93
Energy contribution -19.10
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.36
Structure conservation index 0.75
SVM decision value 0.07
SVM RNA-class probability 0.567639
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14660566 94 + 27905053
-UGGUGAGCGAGUGCGCAUACGUGUAGGUAAAUAAAAGCUGUUAAAAUACGAUAGUGUUGCCUAUUAGCACAAUAGGCCAACGCACACAUAUGCG
-......((....))(((((.((((.(((........)))..............((((((((((((.....)))))).)))))))))).))))). ( -26.00)
>DroPse_CAF1 73924 87 + 1
UUCGUGUGCGA----GCACACAUG----UAAAUAAAAGCUGUUAAAAUACGAUAGUGUAGCCUAUUAGCACAAUAGGCCAACGCACACAGAGAGA
...(((((((.----.........----.........((((((.......))))))...(((((((.....)))))))...)))))))....... ( -24.40)
>DroSec_CAF1 75868 92 + 1
-CGGUGAGCAAGUGUGCAUACAUGUAGGUAACUAAAAGCUGUUA--GUGCGAUAGUGUUGCCUAUUAGCACAAUAGGCCAACGCACACAUAUGCG
-......(((.((((((.......(((....)))...((((((.--....))))))((((((((((.....)))))).))))))))))...))). ( -27.10)
>DroSim_CAF1 82915 94 + 1
-CGGUGAGCAAGUGCGCAUACAUGUAGGUAAAUAAAAGCUGUUAAAAUACGAUAGUGUUGCCUAUUAGCACAAUAGGCCAACGCACACAUAUGCG
-......((....))(((((..(((.(((........)))..............((((((((((((.....)))))).)))))))))..))))). ( -23.30)
>DroEre_CAF1 74703 94 + 1
-UGGUGAGCGAGUGCGCUUACAUGUAGGUAAAUAAAAGCUGUUAAAAUACGAUAGUGUUGCCUAUUAGCACAAUAGGCCAACGCACACAUAUGCG
-..(((((((....)))))))((((..((........((((((.......))))))((((((((((.....)))))).))))))..))))..... ( -26.20)
>DroPer_CAF1 75839 85 + 1
UUCGUGUGCGA----GCACACAUG----UAAAUAAAAGCUGUUAAAAUACGAUAGUGUUGCCUAUUAGCACAAUAGGCCAACGCACACAGAGA--
...((((((((----((((...((----((((((.....))))....))))...)))))(((((((.....)))))))...))))))).....-- ( -24.80)
>consensus
_UGGUGAGCGAGUGCGCAUACAUGUAGGUAAAUAAAAGCUGUUAAAAUACGAUAGUGUUGCCUAUUAGCACAAUAGGCCAACGCACACAUAUGCG
...(((.((............................((((((.......))))))((((((((((.....)))))).)))))).)))....... (-18.93 = -19.10 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:49 2006