Locus 5548

Sequence ID 3R_DroMel_CAF1
Location 14,656,234 – 14,656,331
Length 97
Max. P 0.867964
window9045

overview

Window 5

Location 14,656,234 – 14,656,331
Length 97
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.45
Mean single sequence MFE -30.25
Consensus MFE -23.27
Energy contribution -24.00
Covariance contribution 0.73
Combinations/Pair 1.27
Mean z-score -1.63
Structure conservation index 0.77
SVM decision value 0.86
SVM RNA-class probability 0.867964
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 14656234 97 - 27905053
UUACUUUCUGACAUCUUUCCCGAUGCGGAUAAGUGUCAAGCUUUC-GGAUCCUGACCAGGUGAAAAGUUCGCUCAGUUGGUCUUGUCCAACGCACUAA
.(((((((((.((((......)))))))).)))))....((.((.-((((...((((((.(((.........))).))))))..)))))).))..... ( -28.50)
>DroSec_CAF1 71515 97 - 1
UCACCUUCUGGCAUCUUUCCCGAUGCGGAUAAGUGUCAAGCUUCU-GGGGCUUGACCAGGUGAAAAGUUCGCUCGGUUGGUCUUGUCCAACGCACUAA
((((((((((.((((......))))))))...(.((((((((...-..))))))))))))))).......((...(((((......)))))))..... ( -33.50)
>DroSim_CAF1 78559 97 - 1
UCACCUUCUGGCAUCUUUCCCGAUGCGGAUAAGUGUCAAGCUUCU-GGGGCUUGACCAGGUGAAAAGUUCGCUCGGUUGGUCUUGUCCAACGCACUAA
((((((((((.((((......))))))))...(.((((((((...-..))))))))))))))).......((...(((((......)))))))..... ( -33.50)
>DroEre_CAF1 70342 97 - 1
UCGCUUUCUGGCAUCUUUCCCGAUGCGGAUAAGUGUCAGGCUUCU-GGAGCCUGAACAGGUGAAAAGUUCGCUCGGUUGCUCCUGUCCAACGCACUAA
..((......(((((......)))))((((((((.((((((((..-.)))))))).(..((((.....))))..)...)))..)))))...))..... ( -30.60)
>DroYak_CAF1 69631 89 - 1
UCGCUUUCUGGCAUCUUUUUCGAUGCAGAUAAGUGUCAGGCUUCU-GGGGCUUGACCAGGUGAAAAGUUCGCUCGGUUUGUCCUGUCCAA--------
.(((((((((.((((......)))))))).)))))...(((....-(((((..((((..((((.....))))..)))).))))))))...-------- ( -29.70)
>DroAna_CAF1 67399 90 - 1
-----CUUCGUCAUCGUCGCC---GAGGAUGAGUGUCAAGCUUUUCGGAACUCGACCAGGUGAAAAGUUCACUCCAAUGGCCUCGUCUGGCUUACGAA
-----........((((.(((---..(((((((.(((((((((((((...((.....)).)))))))))........))))))))))))))..)))). ( -25.70)
>consensus
UCACUUUCUGGCAUCUUUCCCGAUGCGGAUAAGUGUCAAGCUUCU_GGAGCUUGACCAGGUGAAAAGUUCGCUCGGUUGGUCUUGUCCAACGCACUAA
..........(((((......)))))(((((((.(((((((((....)))))))))..(((((.....)))))........))))))).......... (-23.27 = -24.00 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:48 2006