| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,650,688 – 14,650,791 |
| Length | 103 |
| Max. P | 0.814016 |
| Location | 14,650,688 – 14,650,791 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 80.40 |
| Mean single sequence MFE | -19.94 |
| Consensus MFE | -13.98 |
| Energy contribution | -13.87 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814016 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14650688 103 + 27905053 -UGCCCCCCUCUCUUCCGCCAUUCCAACGAUUCCAU-------UUGGCAGCCCCAAACCCAUUUCGAGUUAGCUUAGCUCACAGCCAAAUGGCGCCACCUAGACAUUUAUA -...............(((((((.....((.....(-------((((.....)))))......))((((((...)))))).......)))))))................. ( -16.80) >DroSec_CAF1 65787 92 + 1 UUGCCCC-----------CCACUCCAACGAUUCCAU-------UUGGC-GCCCCAAACCCAUUUGGAGUUAGCUUAGCUCACAGCCAAAUGGCGCCACCUAGACAUUUAUA .......-----------..............((((-------(((((-...(((((....))))).((.(((...))).)).)))))))))................... ( -20.20) >DroEre_CAF1 64297 93 + 1 UACCCCA-----------CCAUUCCAGCGAUUCCAU-------UUGGCAGCCCCAAACCCAUUUCGAGUUAGCUCAGCUCACAGCCAAAUGGCGCCACCUAGACAUUUAUA .......-----------........(((...((((-------(((((.(...)...........(((((.....)))))...))))))))))))................ ( -18.50) >DroYak_CAF1 62942 93 + 1 UGCCCAC-----------CCUUUCCGGCGAUUCCAU-------UUGGCAGCCCCAAACCCAUUUCGAGUUAGCUCAGCUCACAGCCAAAUGGCGCCACCUAGACAUUUAUA .......-----------.......((((...((((-------(((((.(...)...........(((((.....)))))...)))))))))))))............... ( -22.80) >DroAna_CAF1 62014 93 + 1 GGCCUGG-----------CCAUCCCAGCGAUUCCAU-------UUGGCAGGACUAACCCCAUUCUGGGUUUGCUUAGCUCACAGCCAAAUGGCGCCACCUAGACAUUUAUA (((((((-----------.....)))).....((((-------(((((..(((((((((......)))).....))).))...))))))))).)))............... ( -28.00) >DroPer_CAF1 65913 100 + 1 GUCCUAA-----------CCAUCCCAACGAUUCCUUCCACUUUCUGGUUGCUGUAACCUUAUUUCCAGUUUGCUUAGCUCACAGCCAAAUGGCGCCACCUAGACAUUUAUA (((..((-----------(((.......((.....)).......)))))(((((((.((.......)).))))..))).....(((....)))........)))....... ( -13.34) >consensus UUCCCCC___________CCAUUCCAACGAUUCCAU_______UUGGCAGCCCCAAACCCAUUUCGAGUUAGCUUAGCUCACAGCCAAAUGGCGCCACCUAGACAUUUAUA ............................................((((.................(((((.....)))))...(((....))))))).............. (-13.98 = -13.87 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:45 2006