| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,645,128 – 14,645,241 |
| Length | 113 |
| Max. P | 0.637236 |
| Location | 14,645,128 – 14,645,241 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.04 |
| Mean single sequence MFE | -30.08 |
| Consensus MFE | -19.68 |
| Energy contribution | -19.43 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.637236 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14645128 113 - 27905053 --GAGCAGCAA-G--GGCGGCAUAAUGGAGCA--GCUUUGUGCCUCGGGGCAGCAUUUAAUUACGCUCGUGUUGCUUGUAAUGAGGCAAAUUGCUUUUUGCUGUCAAUUAAAGUAAAGUU --.........-.--(((((((....((((((--(.....((((((((((((((((............)))))))))....)))))))..))))))).)))))))............... ( -35.60) >DroVir_CAF1 67544 99 - 1 -------------------CUGCGCUGGGGUC--GCUUUUAGCCCCAGGACGGCAUUUAAUUACGCUCGUGUUCGUUGUAAUGAGGCAAAUUGCUUUUUGCUGUCAAUUAAAGUAAAGUU -------------------.(((.(((((((.--.......)))))))(((((((....((((((..((....)).))))))(((((.....))))).))))))).......)))..... ( -31.90) >DroGri_CAF1 56514 118 - 1 GCGAACGGCAAUGAUGUUGCUCCAUUGGGGUC--GCCGCUAGCCCCAGGGUGGCAUUUAAUUACACUCGUGUUCGUUGUAAUGAGGCAAAUUGCUUUUUGCUGUCAAUUAAAGUAAAGUU (((((.(((((((((((..(((...((((((.--.......)))))))))..)))))..((((((..((....)).)))))).......)))))).)))))................... ( -36.00) >DroWil_CAF1 65516 105 - 1 --CUUCUGC-------------CCAUUUGGCACGCCAUACCGCCCCAGGGCAGCAUUUAAUUACGCUCGUGUUGCUUGUAAUGAGGCAAAUUGCUUUUUGCUGUCAAUUAAAGUAAAGUU --....(((-------------(((((.(((((((......(((....)))(((..........))).))).))))...)))).)))).......(((((((.........))))))).. ( -26.20) >DroMoj_CAF1 67923 112 - 1 ------GGCACUGAUGUAGCUCUACUGGGGUC--GCCUUUAGCCCCAGGGCGGCAUUUAAUUACGCUCGUGUUCGUUGUAAUGAGGCAAAUUGCUUUUUGCUGUCAAUUAAAGUAAAGUU ------(((((....)).)))...(((((((.--.......)))))))(((((((....((((((..((....)).))))))(((((.....))))).)))))))............... ( -32.40) >DroAna_CAF1 56481 94 - 1 ----------------------CCAUGGAGCA----UUCAUACCCCAGGGCAGCAUUUAAUUACGCUCGUGUUGCUUGUAAUGAGGCAAAUUGCUUUUUGCUGUCAAUUAAAGUAAAGUU ----------------------...(((.(..----......).))).(((((((....(((((((.......))..)))))(((((.....))))).)))))))............... ( -18.40) >consensus _______GC__________CU_CAAUGGGGCA__GCUUUUAGCCCCAGGGCAGCAUUUAAUUACGCUCGUGUUCCUUGUAAUGAGGCAAAUUGCUUUUUGCUGUCAAUUAAAGUAAAGUU .........................((((((..........)))))).(((((((....((((((...........))))))(((((.....))))).)))))))............... (-19.68 = -19.43 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:43 2006