| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 14,637,107 – 14,637,207 |
| Length | 100 |
| Max. P | 0.729531 |
| Location | 14,637,107 – 14,637,207 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 81.38 |
| Mean single sequence MFE | -28.53 |
| Consensus MFE | -16.49 |
| Energy contribution | -16.38 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.729531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 14637107 100 - 27905053 ACGUGCCACUUGAUGUAUAUUUCGGCAACAUUAUACCCGGCGCUUAAUACUUUAUGCUUAUUUUGUUGCCACAACC---CCGGUUUUAGU--AGGUGG----CGCGUUG ((((((((((((...........(((((((..(((...((((..(((....))))))))))..)))))))..(((.---...)))....)--))))))----))))).. ( -33.20) >DroSec_CAF1 52234 82 - 1 ACGUGCCACUUGAUGUAUAUUUCGGCAACAUUAUACCCGGCGCUUAAUACUUUAUUCUUAUUUUGUUGCCACAACC---CCGGUU------------------------ ....(((....((........))(((((((..(((.......................)))..)))))))......---..))).------------------------ ( -13.00) >DroSim_CAF1 59284 100 - 1 ACGUGCCACUUGAUGUAUAUUUCGGCAACAUUAUACCCGGCGCUUAAUACUUUAUGCUUAUUUUGUUGCCACAACC---CCGGUUGUUGU--UGGUGG----CGCGUUG ((((((((((.............(((((((..(((...((((..(((....))))))))))..)))))))(((((.---...)))))...--.)))))----))))).. ( -35.20) >DroEre_CAF1 50902 102 - 1 GCCUGCCACUUGAUGUAUAUUUCGGCAACAUUAUAACCGGCGCUUAAUACUUUAUGCUUAUUUUGUUGCCACAACC---CCGGUUUUCGAGAUGGCCG----AGUGGUG ....((((((((.....(((((((((((((..(((...((((..(((....))))))))))..)))))))..(((.---...)))...))))))..))----)))))). ( -30.30) >DroYak_CAF1 52924 106 - 1 GCUUGCCACUUGAUGUAUAUUUCGGCAACAUUAUAACCGGCGCUUAAUACUUUAUGCUUAUUUUGUUGCCACAACC---CCGGUUUUCGAGACGGGCGUUGGAUGGUUG ....((((...............(((((((..(((...((((..(((....))))))))))..))))))).(((((---(((..........)))).))))..)))).. ( -29.00) >DroAna_CAF1 48370 98 - 1 ACCUGCCACUUGAUGUUUAUUUCGGCAACAUUAUACCCAGCGCUUAAUACUUUAUGCUUAUUUUGUUGCCGCAACCGACUCGGCUCAGGCCAAGGC---------GG-- ..(((((....((.(((..((.((((((((..(((...((((..(((....))))))))))..)))))))).))..)))))(((....)))..)))---------))-- ( -30.50) >consensus ACGUGCCACUUGAUGUAUAUUUCGGCAACAUUAUACCCGGCGCUUAAUACUUUAUGCUUAUUUUGUUGCCACAACC___CCGGUUUUCGA__AGGC_G_____G_GUUG ....(((....((........))(((((((..(((...((((..(((....))))))))))..)))))))...........)))......................... (-16.49 = -16.38 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:57:40 2006